Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLHP_RS03685 Genome accession   NZ_CP120921
Coordinates   720102..721085 (+) Length   327 a.a.
NCBI ID   WP_032950503.1    Uniprot ID   A0A1V0PIB8
Organism   Lactococcus cremoris subsp. cremoris HP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715102..726085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLHP_RS03660 (LLHP_03675) - 715587..716522 (+) 936 WP_031559015.1 IS30 family transposase -
  LLHP_RS03665 (LLHP_03680) - 716644..716841 (+) 198 WP_250638141.1 alpha/beta hydrolase -
  LLHP_RS03670 (LLHP_03685) - 716880..717467 (+) 588 WP_250638196.1 alpha/beta hydrolase -
  LLHP_RS03675 (LLHP_03690) - 717606..718781 (-) 1176 WP_003138385.1 IS256-like element IS905 family transposase -
  LLHP_RS03680 (LLHP_03695) - 718942..720027 (+) 1086 WP_014572240.1 YdcF family protein -
  LLHP_RS03685 (LLHP_03700) coiA 720102..721085 (+) 984 WP_032950503.1 competence protein CoiA Machinery gene
  LLHP_RS03690 (LLHP_03705) pepF 721160..722965 (+) 1806 WP_032950505.1 oligoendopeptidase F Regulator
  LLHP_RS03695 (LLHP_03710) - 722968..723651 (+) 684 WP_011676723.1 O-methyltransferase -
  LLHP_RS03700 (LLHP_03715) - 723807..724733 (+) 927 WP_032950507.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39121.86 Da        Isoelectric Point: 9.7664

>NTDB_id=809328 LLHP_RS03685 WP_032950503.1 720102..721085(+) (coiA) [Lactococcus cremoris subsp. cremoris HP]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=809328 LLHP_RS03685 WP_032950503.1 720102..721085(+) (coiA) [Lactococcus cremoris subsp. cremoris HP]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0PIB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

97.248

100

0.972
  coiA Streptococcus mitis NCTC 12261

44.444

99.083

0.44
  coiA Streptococcus pneumoniae TIGR4

43.21

99.083

0.428
  coiA Streptococcus pneumoniae Rx1

43.21

99.083

0.428
  coiA Streptococcus pneumoniae D39

43.21

99.083

0.428
  coiA Streptococcus pneumoniae R6

43.21

99.083

0.428