Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RMP64_RS06005 Genome accession   NZ_CP135093
Coordinates   1192579..1193061 (+) Length   160 a.a.
NCBI ID   WP_002938080.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1187579..1198061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS05980 (RMP64_05980) - 1188827..1190137 (-) 1311 WP_002938090.1 GntP family permease -
  RMP64_RS05985 (RMP64_05985) folK 1190188..1190676 (-) 489 WP_009910002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RMP64_RS05990 (RMP64_05990) folB 1190673..1191035 (-) 363 WP_002938086.1 dihydroneopterin aldolase -
  RMP64_RS05995 (RMP64_05995) folP 1191028..1191840 (-) 813 WP_044675545.1 dihydropteroate synthase -
  RMP64_RS06000 (RMP64_06000) folE 1191849..1192412 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  RMP64_RS06005 (RMP64_06005) mutX 1192579..1193061 (+) 483 WP_002938080.1 8-oxo-dGTP diphosphatase Machinery gene
  RMP64_RS06010 (RMP64_06010) - 1193110..1193787 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  RMP64_RS06015 (RMP64_06015) - 1193774..1194517 (-) 744 WP_002938076.1 polyphosphate polymerase domain-containing protein -
  RMP64_RS06020 (RMP64_06020) - 1194710..1195012 (+) 303 WP_002938072.1 hypothetical protein -
  RMP64_RS06025 (RMP64_06025) - 1195033..1195299 (-) 267 WP_002938070.1 DUF2087 domain-containing protein -
  RMP64_RS06030 (RMP64_06030) pheT 1195354..1197753 (-) 2400 WP_024394638.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=809130 RMP64_RS06005 WP_002938080.1 1192579..1193061(+) (mutX) [Streptococcus suis strain 1652329]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=809130 RMP64_RS06005 WP_002938080.1 1192579..1193061(+) (mutX) [Streptococcus suis strain 1652329]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGGCAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775