Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   P4G01_RS28455 Genome accession   NZ_CP120881
Coordinates   5864491..5865825 (+) Length   444 a.a.
NCBI ID   WP_309258752.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY7583     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5859491..5870825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4G01_RS28430 (P4G01_28425) pgeF 5859634..5860362 (-) 729 WP_003102588.1 peptidoglycan editing factor PgeF -
  P4G01_RS28435 (P4G01_28430) rluD 5860359..5861321 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P4G01_RS28440 (P4G01_28435) - 5861467..5862492 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  P4G01_RS28445 (P4G01_28440) - 5862649..5862894 (+) 246 WP_003102591.1 PP0621 family protein -
  P4G01_RS28450 (P4G01_28445) pilS 5862884..5864476 (+) 1593 WP_003123394.1 two-component system sensor histidine kinase PilS Regulator
  P4G01_RS28455 (P4G01_28450) pilR 5864491..5865825 (+) 1335 WP_309258752.1 two-component system response regulator PilR Regulator
  P4G01_RS28460 (P4G01_28455) thiO 5865871..5866965 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  P4G01_RS28465 (P4G01_28460) - 5867100..5867609 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  P4G01_RS28470 (P4G01_28465) - 5867715..5868221 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  P4G01_RS28475 (P4G01_28470) pilV 5868212..5868769 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  P4G01_RS28480 (P4G01_28475) pilW 5868766..5869590 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  P4G01_RS28485 (P4G01_28480) pilX 5869587..5870174 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49431.68 Da        Isoelectric Point: 5.6388

>NTDB_id=809130 P4G01_RS28455 WP_309258752.1 5864491..5865825(+) (pilR) [Pseudomonas aeruginosa strain NY7583]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYSSSAIHTPVAMI
TAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVYI
SGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLPM
AMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERIL
KRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDY
LEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=809130 P4G01_RS28455 WP_309258752.1 5864491..5865825(+) (pilR) [Pseudomonas aeruginosa strain NY7583]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACTCCAGCAGCGCCATCCACACCCCGGTGGCCATGATC
ACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGACCT
CGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACCGCC
TGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTACATC
AGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTTCGT
GCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTGGCG
CTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCGATG
GCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGTCGA
CGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACTACC
GCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATCCTC
AAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCGCTT
CCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTCACG
ACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGACTAC
CTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCGCCT
GGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-114)

Bacterial regulatory protein, Fis family (HTH_8)

(401-441)

Sigma-54 interaction domain (Sigma54_activat)

(134-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

98.427

100

0.986
  pilR Acinetobacter baumannii strain A118

50.98

100

0.527
  luxO Vibrio cholerae strain A1552

38.17

100

0.385