Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P4G01_RS28475 Genome accession   NZ_CP120881
Coordinates   5868212..5868769 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY7583     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5863212..5873769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4G01_RS28455 (P4G01_28450) pilR 5864491..5865825 (+) 1335 WP_309258752.1 two-component system response regulator PilR Regulator
  P4G01_RS28460 (P4G01_28455) thiO 5865871..5866965 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  P4G01_RS28465 (P4G01_28460) - 5867100..5867609 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  P4G01_RS28470 (P4G01_28465) - 5867715..5868221 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  P4G01_RS28475 (P4G01_28470) pilV 5868212..5868769 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  P4G01_RS28480 (P4G01_28475) pilW 5868766..5869590 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  P4G01_RS28485 (P4G01_28480) pilX 5869587..5870174 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  P4G01_RS28490 (P4G01_28485) pilY1 5870186..5873677 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=809131 P4G01_RS28475 WP_003119423.1 5868212..5868769(+) (pilV) [Pseudomonas aeruginosa strain NY7583]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=809131 P4G01_RS28475 WP_003119423.1 5868212..5868769(+) (pilV) [Pseudomonas aeruginosa strain NY7583]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995