Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RMQ61_RS02845 Genome accession   NZ_CP135090
Coordinates   553645..554295 (+) Length   216 a.a.
NCBI ID   WP_024376704.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 548645..559295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS02815 (RMQ61_02815) amiE 549038..549772 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  RMQ61_RS02820 (RMQ61_02820) - 549902..550750 (+) 849 WP_313926488.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  RMQ61_RS02825 (RMQ61_02825) - 550993..551442 (+) 450 WP_313926489.1 YSIRK-type signal peptide-containing protein -
  RMQ61_RS02830 (RMQ61_02830) - 551462..551755 (+) 294 WP_313926490.1 hypothetical protein -
  RMQ61_RS02835 (RMQ61_02835) - 551763..552254 (+) 492 WP_313926491.1 hypothetical protein -
  RMQ61_RS02840 (RMQ61_02840) - 552507..553208 (-) 702 WP_099776509.1 CPBP family intramembrane glutamic endopeptidase -
  RMQ61_RS02845 (RMQ61_02845) scnR 553645..554295 (+) 651 WP_024376704.1 response regulator transcription factor Regulator
  RMQ61_RS02850 (RMQ61_02850) - 554297..555685 (+) 1389 WP_313926492.1 HAMP domain-containing sensor histidine kinase -
  RMQ61_RS02855 (RMQ61_02855) - 556283..556834 (+) 552 WP_024418639.1 isoprenylcysteine carboxyl methyltransferase family protein -
  RMQ61_RS02860 (RMQ61_02860) - 557043..557951 (-) 909 WP_313926494.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24768.88 Da        Isoelectric Point: 4.6866

>NTDB_id=809017 RMQ61_RS02845 WP_024376704.1 553645..554295(+) (scnR) [Streptococcus suis strain ID48908]
MSRILVVEDDIVISQVVCEFLKEYGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=809017 RMQ61_RS02845 WP_024376704.1 553645..554295(+) (scnR) [Streptococcus suis strain ID48908]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAATATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGTGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTAACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGGTATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38