Detailed information NTG0808985

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RMQ61_RS00365
• Genome accession: NZ_CP135090
• Coordinates: 61200..62204 (+)
• Length: 334 a.a.
• NCBI ID: WP_024416935.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID48908
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 56200..67204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ61_RS00335 (RMQ61_00335)	-	56250..56828 (+)	579	WP_313920894.1	CPBP family intramembrane glutamic endopeptidase	-
RMQ61_RS00340 (RMQ61_00340)	-	56843..57271 (+)	429	WP_024403275.1	Msa family membrane protein	-
RMQ61_RS00345 (RMQ61_00345)	-	57264..58136 (+)	873	WP_015646233.1	ABC transporter ATP-binding protein	-
RMQ61_RS00350 (RMQ61_00350)	-	58142..58915 (+)	774	Protein_49	hypothetical protein	-
RMQ61_RS00355 (RMQ61_00355)	-	58918..60630 (+)	1713	WP_313926407.1	ABC transporter ATP-binding protein	-
RMQ61_RS00360 (RMQ61_00360)	-	60732..60905 (+)	174	WP_011921669.1	hypothetical protein	-
RMQ61_RS00365 (RMQ61_00365)	ruvB	61200..62204 (+)	1005	WP_024416935.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RMQ61_RS00370 (RMQ61_00370)	-	62204..62950 (+)	747	WP_024415611.1	GNAT family N-acetyltransferase	-
RMQ61_RS00375 (RMQ61_00375)	-	62952..63590 (+)	639	WP_172011954.1	HAD-IA family hydrolase	-
RMQ61_RS00380 (RMQ61_00380)	-	63880..65082 (-)	1203	WP_313921432.1	IS110 family transposase	-
RMQ61_RS00385 (RMQ61_00385)	comR	65447..66364 (+)	918	WP_024383080.1	helix-turn-helix domain-containing protein	Regulator

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37742.24 Da
• Isoelectric Point: 4.4407

>NTDB_id=808985 RMQ61_RS00365 WP_024416935.1 61200..62204(+) (ruvB) [Streptococcus suis strain ID48908]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEEK

Nucleotide

• Length: 1005 bp

>NTDB_id=808985 RMQ61_RS00365 WP_024416935.1 61200..62204(+) (ruvB) [Streptococcus suis strain ID48908]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAATATGTCGAGCGTACCCTGCGTCCGCAGAAATTAAA
CGAATACATCGGTCAGGACAAGGTTAAGGACCAGCTCAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCCTTTGTCATCGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTCTACTCAGCCATGGAAGACTTCTACATCG
ACATCATGATTGGGGCTGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCCCGATTTGGGATTACCGGTCATATGGAGTATTACGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GACGATAGCATTACGGATAAGGCCCTGACTATGCTGGATGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.102	0.892
ruvB	Streptococcus pneumoniae R6	89.728	99.102	0.889
ruvB	Streptococcus pneumoniae D39	89.728	99.102	0.889
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.605	0.572
ruvB	Helicobacter pylori 26695	51.064	98.503	0.503
ruvB	Synechocystis sp. PCC 6803	50.479	93.713	0.473