Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RMP65_RS08345 Genome accession   NZ_CP135089
Coordinates   1703845..1704339 (-) Length   164 a.a.
NCBI ID   WP_015647334.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1698845..1709339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS08325 (RMP65_08325) - 1699488..1700144 (+) 657 WP_024406583.1 DUF1129 domain-containing protein -
  RMP65_RS08330 (RMP65_08330) - 1700537..1701739 (+) 1203 WP_109371051.1 IS110 family transposase -
  RMP65_RS08335 (RMP65_08335) - 1701960..1703216 (+) 1257 WP_313681155.1 ISL3 family transposase -
  RMP65_RS08340 (RMP65_08340) rpsR 1703573..1703812 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  RMP65_RS08345 (RMP65_08345) ssbA 1703845..1704339 (-) 495 WP_015647334.1 single-stranded DNA-binding protein Machinery gene
  RMP65_RS08350 (RMP65_08350) rpsF 1704351..1704641 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  RMP65_RS08355 (RMP65_08355) - 1704813..1705802 (-) 990 WP_014736331.1 lipoate--protein ligase -
  RMP65_RS08360 (RMP65_08360) - 1705932..1707092 (+) 1161 WP_313681156.1 DUF6688 family protein -
  RMP65_RS08365 (RMP65_08365) - 1707129..1708568 (-) 1440 WP_202846742.1 6-phospho-beta-glucosidase -
  RMP65_RS08370 (RMP65_08370) - 1708583..1709185 (-) 603 WP_313681160.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18132.89 Da        Isoelectric Point: 4.7294

>NTDB_id=808963 RMP65_RS08345 WP_015647334.1 1703845..1704339(-) (ssbA) [Streptococcus suis strain ID34567]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGTSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=808963 RMP65_RS08345 WP_015647334.1 1703845..1704339(-) (ssbA) [Streptococcus suis strain ID34567]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACTGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGATTATAACTCACCTTATCAAG
CACCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAACAAGTAATCCAATGGACATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366