Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P4829_RS20980 Genome accession   NZ_CP120846
Coordinates   4137287..4137802 (-) Length   171 a.a.
NCBI ID   WP_003326057.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4132287..4142802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS20950 (P4829_20950) - 4132614..4133180 (-) 567 WP_063638369.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  P4829_RS20955 (P4829_20955) - 4133299..4134057 (-) 759 WP_003326063.1 exodeoxyribonuclease III -
  P4829_RS20960 (P4829_20960) - 4134255..4135172 (+) 918 Protein_4081 EamA family transporter -
  P4829_RS20965 (P4829_20965) - 4135305..4135931 (+) 627 WP_063638405.1 GntR family transcriptional regulator -
  P4829_RS20970 (P4829_20970) - 4136034..4136873 (-) 840 WP_063638370.1 MBL fold metallo-hydrolase -
  P4829_RS20975 (P4829_20975) rpsR 4137004..4137243 (-) 240 WP_003326058.1 30S ribosomal protein S18 -
  P4829_RS20980 (P4829_20980) ssbA 4137287..4137802 (-) 516 WP_003326057.1 single-stranded DNA-binding protein SsbA Machinery gene
  P4829_RS20985 (P4829_20985) rpsF 4137842..4138129 (-) 288 WP_003326056.1 30S ribosomal protein S6 -
  P4829_RS20990 (P4829_20990) ychF 4138242..4139342 (-) 1101 WP_003326055.1 redox-regulated ATPase YchF -
  P4829_RS20995 (P4829_20995) - 4139469..4141472 (-) 2004 WP_063638371.1 molybdopterin-dependent oxidoreductase -
  P4829_RS21000 (P4829_21000) - 4141522..4141728 (-) 207 WP_063638372.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18630.21 Da        Isoelectric Point: 4.7621

>NTDB_id=808885 P4829_RS20980 WP_003326057.1 4137287..4137802(-) (ssbA) [Bacillus atrophaeus strain MBLB1156]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDGK
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=808885 P4829_RS20980 WP_003326057.1 4137287..4137802(-) (ssbA) [Bacillus atrophaeus strain MBLB1156]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCTAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCGGTGAATCGTACGTTTACGAATCAGTCAGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTTAAAAAAGGAAGCCTTGCAGGCGTGGATGGCCGTTTACAAACAAGA
AATTACGAAAACCAGCAGGGACAGCGCGTCTTCGTGACCGAAGTTCAGGCTGAAAGTGTTCAGTTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGGTACAACGAAGGAAATAGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATAATC
CATTTGGCGGAAATCAAAACAATCAGAAACGAAATCAAGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGCAAA
CCGATTGACATCTCAGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

57.955

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.392