Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RMP67_RS09280 Genome accession   NZ_CP135087
Coordinates   1892273..1892917 (+) Length   214 a.a.
NCBI ID   WP_313920417.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1887273..1897917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS09260 (RMP67_09260) pflA 1888425..1889216 (-) 792 WP_012027587.1 pyruvate formate-lyase-activating protein -
  RMP67_RS09265 (RMP67_09265) - 1889333..1890670 (-) 1338 WP_002942867.1 hemolysin family protein -
  RMP67_RS09270 (RMP67_09270) - 1890803..1891582 (+) 780 WP_044754296.1 ABC transporter ATP-binding protein -
  RMP67_RS09275 (RMP67_09275) - 1891598..1892152 (-) 555 WP_313920415.1 class I SAM-dependent methyltransferase -
  RMP67_RS09280 (RMP67_09280) cclA/cilC 1892273..1892917 (+) 645 WP_313920417.1 prepilin peptidase Machinery gene
  RMP67_RS09285 (RMP67_09285) - 1893025..1894485 (+) 1461 WP_024382383.1 nicotinate phosphoribosyltransferase -
  RMP67_RS09290 (RMP67_09290) nadE 1894498..1895322 (+) 825 WP_313920420.1 ammonia-dependent NAD(+) synthetase -
  RMP67_RS09295 (RMP67_09295) trpB 1895364..1896539 (-) 1176 WP_313920422.1 tryptophan synthase subunit beta -
  RMP67_RS09300 (RMP67_09300) - 1897359..1897886 (-) 528 WP_002942846.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24308.51 Da        Isoelectric Point: 8.6606

>NTDB_id=808867 RMP67_RS09280 WP_313920417.1 1892273..1892917(+) (cclA/cilC) [Streptococcus suis strain ID26102]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPASHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LLVLLCHFHILTITETTLILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICRFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=808867 RMP67_RS09280 WP_313920417.1 1892273..1892917(+) (cclA/cilC) [Streptococcus suis strain ID26102]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCAGCTAGTCACTGCAATGCTTGCAAACGACGGCTCAAGGCTTGGGATCTAATTCCTATTCTTTCCC
AGCTTTCCACAAAATCCAAGTGCCGTTACTGCAAGGCGAAAATTCCTTATTGGTATCTGGGACTAGAGTTCTTAGCTGGT
CTATTGGTCCTACTCTGCCATTTTCACATCCTAACCATAACCGAAACTACTCTTATCTTAGCCGGGCTGGTCTTGACCAT
TTACGACATCAAGCATCAGGAATATCCCTTCGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTAGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50

99.065

0.495
  cclA/cilC Streptococcus pneumoniae Rx1

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae D39

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae R6

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

48.113

99.065

0.477
  cclA/cilC Streptococcus mitis NCTC 12261

46.226

99.065

0.458