Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RPQ02_RS08120 Genome accession   NZ_CP135085
Coordinates   1796030..1797103 (-) Length   357 a.a.
NCBI ID   WP_313936346.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1791030..1802103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS08100 (RPQ02_08100) - 1791818..1792369 (-) 552 WP_313936342.1 adenine phosphoribosyltransferase -
  RPQ02_RS08105 (RPQ02_08105) secF 1792366..1793469 (-) 1104 WP_313936343.1 protein translocase subunit SecF -
  RPQ02_RS08110 (RPQ02_08110) secD 1793471..1795213 (-) 1743 WP_313936344.1 protein translocase subunit SecD -
  RPQ02_RS08115 (RPQ02_08115) yajC 1795361..1795864 (-) 504 WP_313936345.1 preprotein translocase subunit YajC -
  RPQ02_RS08120 (RPQ02_08120) ruvB 1796030..1797103 (-) 1074 WP_313936346.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RPQ02_RS08125 (RPQ02_08125) ruvA 1797175..1797801 (-) 627 WP_030968728.1 Holliday junction branch migration protein RuvA -
  RPQ02_RS08130 (RPQ02_08130) ruvC 1797798..1798370 (-) 573 WP_030918815.1 crossover junction endodeoxyribonuclease RuvC -
  RPQ02_RS08135 (RPQ02_08135) - 1798492..1799244 (-) 753 WP_030918812.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RPQ02_RS08140 (RPQ02_08140) pdxT 1799307..1799900 (-) 594 WP_030918809.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  RPQ02_RS08145 (RPQ02_08145) pdxS 1799907..1800827 (-) 921 WP_030968722.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  RPQ02_RS08150 (RPQ02_08150) - 1801097..1801642 (-) 546 WP_030968720.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38072.52 Da        Isoelectric Point: 4.9775

>NTDB_id=808645 RPQ02_RS08120 WP_313936346.1 1796030..1797103(-) (ruvB) [Streptomyces sp. AM2-3-1]
MNWDDTGPDTDERLDERLVDAGADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAALARGATADHVLLSGAPGLGKT
TLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLDVAIDADGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKADGRIDRTVAAAALKVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRVATPAAWTHLGLVPPSHGGKGQQGLFGA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=808645 RPQ02_RS08120 WP_313936346.1 1796030..1797103(-) (ruvB) [Streptomyces sp. AM2-3-1]
ATGAACTGGGACGACACCGGACCCGACACCGACGAGCGGCTCGACGAGCGCCTCGTCGACGCAGGCGCGGACGGCGAGGA
CACCGCGGTCGAAGCGGCCCTGCGGCCGAAGGACCTCGACGAGTTCGTCGGCCAGGAGAAGGTGCGCGAACAGCTCGACC
TGGTCCTGAAGGCGGCCCTGGCCCGTGGCGCCACCGCCGACCACGTCCTGCTCTCCGGTGCCCCCGGCCTCGGCAAGACC
ACCCTCTCCATGATCATCGCCGCCGAGATGGGCGCCCCGATCCGGATCACCTCCGGTCCCGCCATCCAGCACGCGGGCGA
CCTCGCCGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCACGGCCCGCCG
AAGAGATGCTCTACATGGCCATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCG
CTGGAGCTGCCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGACTCCTGCCGCCACCGCTGCGCGACCGCTTCGG
GTTCACCGGTCACATGGAGTTCTACGCCCCCGCCGAACTGGAACGCGTCATCCACCGCTCGGCCCGCCTCCTCGACGTCG
CGATAGACGCCGACGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACGCCCCGTATCGCCAACCGCCTGCTGCGCCGC
GTCCGTGACTACGCCCAGGTCAAGGCGGACGGCCGGATCGACCGCACCGTCGCCGCCGCGGCCCTCAAGGTGTACGAGGT
CGACGCCAGGGGCCTGGACCGGCTGGACCGGGCGGTGCTCGGCGCGCTGCTGAAGCTCTTCGGTGGCGGCCCGGTCGGAC
TGTCCACCCTCGCGGTGGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCGGAGCCCTTCCTGGTACGGGAAGGT
CTGCTGGCCAGGACGCCGAGGGGCCGGGTCGCCACCCCGGCGGCCTGGACCCATCTGGGTCTCGTCCCCCCGTCCCATGG
TGGAAAAGGACAACAGGGTCTTTTTGGGGCGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)

RuvB AAA lid domain (AAA_lid_4)

(195-268)

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.453

93.277

0.499
  ruvB Streptococcus pneumoniae TIGR4

52.469

90.756

0.476
  ruvB Streptococcus pneumoniae R6

52.469

90.756

0.476
  ruvB Streptococcus pneumoniae D39

52.469

90.756

0.476
  ruvB Synechocystis sp. PCC 6803

53.333

88.235

0.471
  ruvB Helicobacter pylori 26695

49.398

92.997

0.459