Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P7C01_RS28660 Genome accession   NZ_CP120725
Coordinates   6372668..6373303 (-) Length   211 a.a.
NCBI ID   WP_162884118.1    Uniprot ID   -
Organism   Pseudomonas danubii strain JDS10PS014     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6367668..6378303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7C01_RS28625 (P7C01_28520) - 6368061..6368531 (-) 471 WP_102878924.1 (2Fe-2S)-binding protein -
  P7C01_RS28630 (P7C01_28525) murB 6368783..6369802 (-) 1020 WP_404941693.1 UDP-N-acetylmuramate dehydrogenase -
  P7C01_RS28635 (P7C01_28530) - 6369799..6370263 (-) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  P7C01_RS28640 (P7C01_28535) kdsB 6370263..6371027 (-) 765 WP_110595197.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P7C01_RS28645 (P7C01_28540) - 6371024..6371209 (-) 186 WP_011060103.1 Trm112 family protein -
  P7C01_RS28650 (P7C01_28545) lpxK 6371233..6372243 (-) 1011 WP_102878921.1 tetraacyldisaccharide 4'-kinase -
  P7C01_RS28655 (P7C01_28550) - 6372243..6372671 (-) 429 WP_102863926.1 biopolymer transporter ExbD -
  P7C01_RS28660 (P7C01_28555) exbB 6372668..6373303 (-) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P7C01_RS28665 (P7C01_28560) comA 6373406..6375637 (-) 2232 WP_213664956.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P7C01_RS28670 (P7C01_28565) - 6375777..6376292 (+) 516 WP_102863929.1 DUF2062 domain-containing protein -
  P7C01_RS28675 (P7C01_28570) - 6376346..6377125 (-) 780 WP_102863930.1 ABC transporter permease -
  P7C01_RS28680 (P7C01_28575) - 6377122..6378054 (-) 933 WP_102863931.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.10 Da        Isoelectric Point: 7.3617

>NTDB_id=808447 P7C01_RS28660 WP_162884118.1 6372668..6373303(-) (exbB) [Pseudomonas danubii strain JDS10PS014]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=808447 P7C01_RS28660 WP_162884118.1 6372668..6373303(-) (exbB) [Pseudomonas danubii strain JDS10PS014]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAGAAACTCAAGGAACTGCGTGCCGATTCGCCCCTGGGAGAGATCCTGGCAGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCCCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGATCGGGCATGACCAGCAACGCTGCAGTGCTTGCCGGTGGTATTTCCAAGGCACTGATCACCACTGCC
GCCGGTTTGATGGTGGGCATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877