Detailed information NTG0808418

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RMQ63_RS05980
• Genome accession: NZ_CP135063
• Coordinates: 1248815..1249816 (+)
• Length: 333 a.a.
• NCBI ID: WP_004195448.1
• Uniprot ID: A0A0H3MST2
• Organism: Streptococcus suis strain ID32563
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1243815..1254816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ63_RS05955 (RMQ63_05955)	-	1245283..1245456 (+)	174	WP_222759581.1	hypothetical protein	-
RMQ63_RS05960 (RMQ63_05960)	-	1245736..1246605 (-)	870	WP_313680565.1	cysteine ABC transporter substrate-binding protein	-
RMQ63_RS05965 (RMQ63_05965)	-	1246619..1247365 (-)	747	WP_044677099.1	amino acid ABC transporter ATP-binding protein	-
RMQ63_RS05970 (RMQ63_05970)	-	1247370..1248047 (-)	678	WP_044677097.1	amino acid ABC transporter permease	-
RMQ63_RS05975 (RMQ63_05975)	-	1248028..1248687 (-)	660	WP_044677125.1	amino acid ABC transporter permease	-
RMQ63_RS05980 (RMQ63_05980)	ruvB	1248815..1249816 (+)	1002	WP_004195448.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RMQ63_RS05985 (RMQ63_05985)	-	1249884..1250507 (+)	624	WP_024414287.1	HAD-IA family hydrolase	-
RMQ63_RS05990 (RMQ63_05990)	comR	1250612..1251511 (+)	900	WP_015646238.1	helix-turn-helix domain-containing protein	Regulator
RMQ63_RS05995 (RMQ63_05995)	-	1251719..1252939 (+)	1221	WP_313680566.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
RMQ63_RS06000 (RMQ63_06000)	-	1253130..1254653 (+)	1524	WP_313680567.1	quinol oxidase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37613.12 Da
• Isoelectric Point: 4.4673

>NTDB_id=808418 RMQ63_RS05980 WP_004195448.1 1248815..1249816(+) (ruvB) [Streptococcus suis strain ID32563]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=808418 RMQ63_RS05980 WP_004195448.1 1248815..1249816(+) (ruvB) [Streptococcus suis strain ID32563]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGACGAGGAGTACGTAGAACGCACTCTGCGTCCACAGAAATTAAA
TGAGTACATAGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTCGGACCTCCAGGTTTGGGGAAGACCACCATGGCCTTTGTTATCGCCAACGAACTGGGTGTCAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAGAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGATGT
CCTCTTTATCGATGAAATCCACCGTATGCCTATGGCGGTAGAGGAGATTCTTTACTCAGCCATGGAAGACTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCTAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCTCTGCGGGCCCGTTTTGGGATTACCGGTCACATGGAGTATTACGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGATATCTTTGATATGGAGATTACCCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GATGACAGCATTACGGACAAGGCTTTGACCATGCTGGACGTGGACCGTGAAGGTCTGGACTACGTGGACCAGAAGATTCT
CCGGACCATGATTGAGATGTACGGCGGTGGTCCTGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGATTCCTCATGCGGACGCGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: A0A0H3MST2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474