Detailed information NTG0808400

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: P3T49_RS20860
• Genome accession: NZ_CP120723
• Coordinates: 4119430..4119945 (-)
• Length: 171 a.a.
• NCBI ID: WP_003326057.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain NX-12
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4105581..4119016	4119430..4119945	flank	414

Gene organization within MGE regions

Location: 4105581..4119945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P3T49_RS20785	-	4105581..4106990 (+)	1410	WP_094233116.1	sensor histidine kinase	-
P3T49_RS20790	-	4107115..4107426 (-)	312	WP_003326077.1	DUF4870 domain-containing protein	-
P3T49_RS20795	-	4107779..4108165 (+)	387	WP_277714863.1	ImmA/IrrE family metallo-endopeptidase	-
P3T49_RS20800	-	4108190..4108759 (+)	570	WP_088118393.1	hypothetical protein	-
P3T49_RS20805	-	4108968..4111031 (+)	2064	WP_277714173.1	thioredoxin domain-containing protein	-
P3T49_RS20810	-	4111232..4112578 (+)	1347	WP_003326068.1	MFS transporter	-
P3T49_RS20815	-	4112622..4113002 (-)	381	WP_010790543.1	VOC family protein	-
P3T49_RS20820	-	4113062..4114012 (-)	951	WP_268491851.1	LacI family DNA-binding transcriptional regulator	-
P3T49_RS20825	-	4114201..4114734 (-)	534	WP_094233127.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
P3T49_RS20830	-	4114746..4115312 (-)	567	WP_277714174.1	bifunctional transcriptional activator/DNA repair enzyme AdaA	-
P3T49_RS20835	-	4115431..4116189 (-)	759	WP_277714175.1	exodeoxyribonuclease III	-
P3T49_RS20840	-	4116386..4117303 (+)	918	WP_277714176.1	DMT family transporter	-
P3T49_RS20845	-	4117406..4118074 (+)	669	WP_106272132.1	GntR family transcriptional regulator	-
P3T49_RS20850	-	4118177..4119016 (-)	840	WP_106272130.1	MBL fold metallo-hydrolase	-
P3T49_RS20855	rpsR	4119147..4119386 (-)	240	WP_003326058.1	30S ribosomal protein S18	-
P3T49_RS20860	ssbA	4119430..4119945 (-)	516	WP_003326057.1	single-stranded DNA-binding protein SsbA	Machinery gene

Sequence

Protein

• Length: 171 a.a.
• Molecular weight: 18630.21 Da
• Isoelectric Point: 4.7621

>NTDB_id=808400 P3T49_RS20860 WP_003326057.1 4119430..4119945(-) (ssbA) [Bacillus atrophaeus strain NX-12]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDGK
PIDISDDDLPF

Nucleotide

• Length: 516 bp

>NTDB_id=808400 P3T49_RS20860 WP_003326057.1 4119430..4119945(-) (ssbA) [Bacillus atrophaeus strain NX-12]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCTAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCGGTGAATCGTACGTTTACGAATCAGTCAGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTTAAAAAAGGAAGCCTTGCAGGCGTGGATGGCCGTTTACAAACAAGA
AATTACGAAAACCAGCAGGGACAGCGCGTCTTCGTGACCGAAGTTCAGGCTGAAAGTGTTCAGTTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATAATC
CATTTGGCGGAAATCAAAACAATCAGAAACGAAATCAAGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGCAAA
CCGATTGACATCTCAGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	98.256	100	0.988
ssb	Latilactobacillus sakei subsp. sakei 23K	57.955	100	0.596
ssbB	Bacillus subtilis subsp. subtilis str. 168	64.151	61.988	0.398
ssb	Glaesserella parasuis strain SC1401	36.612	100	0.392