Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   P6988_RS13475 Genome accession   NZ_CP120719
Coordinates   2842858..2843445 (-) Length   195 a.a.
NCBI ID   WP_277684137.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2837858..2848445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS13455 (P6988_13455) - 2838150..2839418 (-) 1269 WP_171348114.1 DUF945 family protein -
  P6988_RS13460 (P6988_13460) - 2839597..2841537 (+) 1941 WP_171348115.1 ATP-binding protein -
  P6988_RS13465 (P6988_13465) - 2841547..2842044 (+) 498 WP_006959028.1 response regulator -
  P6988_RS13470 (P6988_13470) - 2842216..2842770 (+) 555 WP_006959030.1 hypothetical protein -
  P6988_RS13475 (P6988_13475) tfoX 2842858..2843445 (-) 588 WP_277684137.1 TfoX/Sxy family DNA transformation protein Regulator
  P6988_RS13480 (P6988_13480) - 2843792..2844712 (+) 921 WP_006959033.1 HDOD domain-containing protein -
  P6988_RS13485 (P6988_13485) - 2844743..2845648 (+) 906 WP_277684138.1 lysine exporter LysO family protein -
  P6988_RS13490 (P6988_13490) - 2845760..2846275 (+) 516 WP_006959035.1 hypothetical protein -
  P6988_RS13495 (P6988_13495) panP 2846417..2848063 (+) 1647 WP_171348116.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22410.84 Da        Isoelectric Point: 9.7904

>NTDB_id=808314 P6988_RS13475 WP_277684137.1 2842858..2843445(-) (tfoX) [Vibrio coralliilyticus strain Rb102]
MDMTEQQFFNYVNKFGSFQKRSMFGGTGLFKQDAMFALMSADKVFIRGGDYLDDKLTDLGCIKYRHVKKQTTATVNYYDI
THLFNNKNELLDEIVENSIKFSVSQRHYKKSSASRRLRDLPNMQLTLERMVKKAGVVDVDTFLELGAPEVFSKVKATYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKRQLLASCA

Nucleotide


Download         Length: 588 bp        

>NTDB_id=808314 P6988_RS13475 WP_277684137.1 2842858..2843445(-) (tfoX) [Vibrio coralliilyticus strain Rb102]
ATGGATATGACAGAGCAACAATTTTTTAATTACGTTAACAAGTTTGGTAGTTTCCAAAAACGTTCAATGTTTGGTGGAAC
GGGTTTATTCAAACAAGACGCAATGTTTGCCCTAATGAGTGCTGACAAAGTGTTTATTCGAGGTGGTGACTATTTAGATG
ACAAATTGACGGATTTGGGCTGTATCAAGTACCGTCATGTTAAAAAACAAACGACTGCGACGGTGAATTACTACGATATT
ACTCATCTATTTAATAATAAAAATGAGCTTTTAGATGAGATTGTTGAGAATTCGATTAAGTTTTCGGTGTCTCAGCGTCA
CTATAAGAAGTCGTCAGCGAGTCGTCGTTTAAGAGATCTGCCGAACATGCAGCTCACACTAGAGCGCATGGTGAAAAAAG
CGGGTGTTGTTGATGTTGACACCTTCTTGGAGCTCGGTGCACCTGAAGTGTTCTCTAAAGTGAAAGCGACATACGGCAAT
GATGTCGATGTTAAGCTACTTTGGAAATTTGCTGGTGCCATTGATGGTGTACATTGGAAGCTTATCCAAGAACCGCGTAA
ACGTCAGCTTCTAGCGAGTTGTGCGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

71.875

98.462

0.708
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

71.875

98.462

0.708
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

71.875

98.462

0.708
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

71.875

98.462

0.708
  tfoX Vibrio cholerae strain A1552

71.875

98.462

0.708
  tfoX Vibrio campbellii strain DS40M4

71.134

99.487

0.708
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.103

99.487

0.697
  tfoX Aliivibrio fischeri ES114

60.209

97.949

0.59