Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H7K55_RS04615 Genome accession   NZ_AP023049
Coordinates   1182315..1182782 (+) Length   155 a.a.
NCBI ID   WP_009133567.1    Uniprot ID   G5H7V8
Organism   Alistipes indistinctus strain 2BBH45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1177315..1187782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K55_RS04600 (AI2BBH_09080) sppA 1178402..1180189 (+) 1788 WP_242035530.1 signal peptide peptidase SppA -
  H7K55_RS04605 (AI2BBH_09090) lpxK 1180306..1181379 (+) 1074 WP_009133565.1 tetraacyldisaccharide 4'-kinase -
  H7K55_RS04610 (AI2BBH_09100) - 1181336..1182139 (+) 804 WP_009133566.1 purine-nucleoside phosphorylase -
  H7K55_RS04615 (AI2BBH_09110) ssb 1182315..1182782 (+) 468 WP_009133567.1 single-stranded DNA-binding protein Machinery gene
  H7K55_RS04620 (AI2BBH_09120) - 1182812..1183159 (+) 348 WP_009133568.1 translation initiation factor -
  H7K55_RS04625 (AI2BBH_09130) - 1183162..1186017 (+) 2856 WP_182655109.1 hypothetical protein -
  H7K55_RS04630 (AI2BBH_09140) - 1185995..1187407 (-) 1413 WP_182655110.1 trehalase family glycosidase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16934.75 Da        Isoelectric Point: 6.4829

>NTDB_id=80821 H7K55_RS04615 WP_009133567.1 1182315..1182782(+) (ssb) [Alistipes indistinctus strain 2BBH45]
MINKVILIGNVGADPEVRALEGGVKVARLRIATTERIYNRQTQETKEHTEWHNVTLWRNLADVADRFIRKGSQVYIEGSL
RTRDWTDKDGNKRYATEIVANDLKMLGRRGDAPASGADNSYGGSYGGAAQSSQSSPSPSGDIAASAPQEVDDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=80821 H7K55_RS04615 WP_009133567.1 1182315..1182782(+) (ssb) [Alistipes indistinctus strain 2BBH45]
ATGATCAACAAAGTGATTTTGATCGGCAATGTGGGAGCCGATCCCGAAGTGAGAGCGCTCGAAGGCGGTGTCAAGGTGGC
GCGCCTGCGGATCGCAACGACCGAGCGGATCTACAACCGCCAGACACAGGAAACCAAGGAGCATACCGAATGGCATAACG
TGACGCTGTGGCGTAACCTGGCCGACGTGGCCGACCGCTTTATCCGCAAGGGAAGCCAGGTCTATATCGAGGGAAGCCTC
CGCACGAGGGACTGGACGGACAAAGACGGCAATAAACGCTATGCGACCGAAATTGTCGCCAACGACCTGAAGATGCTCGG
GCGCCGCGGGGATGCACCTGCCTCGGGGGCGGACAACTCTTACGGAGGATCTTATGGCGGCGCAGCGCAATCTTCGCAGT
CCTCCCCTTCCCCGTCCGGCGATATTGCCGCATCGGCTCCGCAGGAAGTGGACGATCTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5H7V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.198

100

0.516
  ssb Neisseria gonorrhoeae MS11

43.949

100

0.445
  ssb Neisseria meningitidis MC58

43.312

100

0.439
  ssb Glaesserella parasuis strain SC1401

45.6

80.645

0.368

Multiple sequence alignment