Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RMO93_RS10900 Genome accession   NZ_CP134805
Coordinates   2288671..2289681 (+) Length   336 a.a.
NCBI ID   WP_000568526.1    Uniprot ID   A0A2B7LYQ1
Organism   Escherichia coli strain E7-1N7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2283671..2294681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMO93_RS10870 (RMO93_10870) nudB 2285395..2285847 (+) 453 WP_077248299.1 dihydroneopterin triphosphate diphosphatase -
  RMO93_RS10875 (RMO93_10875) yebC 2285876..2286616 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RMO93_RS10880 (RMO93_10880) ruvC 2286651..2287172 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  RMO93_RS10885 (RMO93_10885) yebB 2287174..2287776 (-) 603 WP_001024929.1 YebB family permuted papain-like enzyme -
  RMO93_RS10890 (RMO93_10890) yobI 2287847..2287912 (+) 66 WP_001386853.1 stress response small protein YobI -
  RMO93_RS10895 (RMO93_10895) ruvA 2288051..2288662 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  RMO93_RS10900 (RMO93_10900) ruvB 2288671..2289681 (+) 1011 WP_000568526.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RMO93_RS10905 (RMO93_10905) znuB 2289828..2290613 (-) 786 WP_000571478.1 zinc ABC transporter permease subunit ZnuB -
  RMO93_RS10910 (RMO93_10910) znuC 2290610..2291365 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  RMO93_RS10915 (RMO93_10915) znuA 2291444..2292376 (+) 933 WP_311820476.1 zinc ABC transporter substrate-binding protein ZnuA -
  RMO93_RS10920 (RMO93_10920) mepM 2292392..2293714 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37199.85 Da        Isoelectric Point: 4.7818

>NTDB_id=808154 RMO93_RS10900 WP_000568526.1 2288671..2289681(+) (ruvB) [Escherichia coli strain E7-1N7]
MIEADRLISAGTTLPEDVVDRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TVRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=808154 RMO93_RS10900 WP_000568526.1 2288671..2289681(+) (ruvB) [Escherichia coli strain E7-1N7]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGTAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAACCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCCGGCGATCTGGCAGCGATGCTCACTAATCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTTTCACCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATTATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCTAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCTGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCTGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACAGTGCGGGCGTGGAACCACTTCGGCATCACGCCACCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B7LYQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

59.248

94.94

0.563
  ruvB Streptococcus pneumoniae R6

59.248

94.94

0.563
  ruvB Streptococcus pneumoniae D39

59.248

94.94

0.563
  ruvB Synechocystis sp. PCC 6803

52.941

96.131

0.509
  ruvB Helicobacter pylori 26695

52.366

94.345

0.494