Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   RI132_RS06435 Genome accession   NZ_CP134783
Coordinates   1389322..1389909 (+) Length   195 a.a.
NCBI ID   WP_011080649.1    Uniprot ID   A0A3Q0L6H9
Organism   Vibrio vulnificus strain GCU-01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384322..1394909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS06420 (RI132_06420) - 1386080..1386592 (-) 513 WP_011150092.1 hypothetical protein -
  RI132_RS06425 (RI132_06425) - 1386790..1387695 (-) 906 WP_011150093.1 lysine exporter LysO family protein -
  RI132_RS06430 (RI132_06430) - 1388042..1388962 (-) 921 Protein_1227 HDOD domain-containing protein -
  RI132_RS06435 (RI132_06435) tfoX 1389322..1389909 (+) 588 WP_011080649.1 TfoX/Sxy family DNA transformation protein Regulator
  RI132_RS06440 (RI132_06440) - 1390235..1390783 (-) 549 WP_130190893.1 hypothetical protein -
  RI132_RS06445 (RI132_06445) - 1390991..1391488 (-) 498 WP_047109127.1 response regulator -
  RI132_RS06450 (RI132_06450) - 1391481..1393424 (-) 1944 WP_130190892.1 ATP-binding protein -
  RI132_RS06455 (RI132_06455) - 1393614..1394876 (+) 1263 WP_011080645.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22355.62 Da        Isoelectric Point: 7.9321

>NTDB_id=807889 RI132_RS06435 WP_011080649.1 1389322..1389909(+) (tfoX) [Vibrio vulnificus strain GCU-01]
MDMTEQAFFDYINQFGDFQKRSMFGGIGLFAEDAMFALVSNGCYYLRGGDSLDDTFCQLGCEKYRHVKKQTTATVNYYEV
SNLLDNRDGQLDRLVKQSIACSVKQRNFQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFMELGAIEVFNRVKQAYGN
DVDVKLLWKFAGAVEGIHWKLLQEPRRKQLLAACC

Nucleotide


Download         Length: 588 bp        

>NTDB_id=807889 RI132_RS06435 WP_011080649.1 1389322..1389909(+) (tfoX) [Vibrio vulnificus strain GCU-01]
ATGGATATGACAGAACAAGCTTTTTTTGACTACATCAACCAATTTGGTGATTTTCAGAAACGTTCAATGTTCGGTGGTAT
CGGCCTGTTTGCGGAAGATGCCATGTTTGCATTGGTGAGTAATGGTTGCTACTACCTTCGTGGTGGAGACAGTTTGGATG
ATACTTTTTGCCAATTGGGCTGTGAGAAGTATCGTCATGTCAAAAAGCAAACCACTGCTACTGTAAATTACTACGAAGTA
TCTAATCTACTTGATAATCGAGATGGTCAGTTGGATCGTTTGGTAAAGCAGTCTATAGCGTGCTCTGTAAAGCAACGTAA
TTTCCAAAAATCATCTGCCAGTCGTCGTTTAAGAGATTTACCGAACATGCAATTAACACTTGAACGCATGGTGAAAAAAG
CAGGGATTGATGACGTTGAAACCTTTATGGAATTAGGAGCGATTGAAGTCTTTAATCGAGTTAAGCAAGCTTACGGTAAT
GACGTTGATGTCAAATTGCTATGGAAATTTGCTGGCGCGGTAGAAGGTATTCATTGGAAATTACTTCAAGAGCCCCGTCG
TAAACAACTTTTGGCTGCATGCTGCTAG

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L6H9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

74.227

99.487

0.738
  tfoX Vibrio parahaemolyticus RIMD 2210633

73.196

99.487

0.728
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

70.833

98.462

0.697
  tfoX Vibrio cholerae strain A1552

70.833

98.462

0.697
  tfoX Aliivibrio fischeri ES114

56.545

97.949

0.554