Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | OW489_RS02430 | Genome accession | NZ_AP026446 |
| Coordinates | 508728..509738 (-) | Length | 336 a.a. |
| NCBI ID | WP_267286108.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CHC155 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 503728..514738
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OW489_RS02385 (CHC155_04750) | - | 503808..504182 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| OW489_RS02390 (CHC155_04760) | - | 504473..505075 (+) | 603 | WP_120856799.1 | outer membrane protein | - |
| OW489_RS02400 (CHC155_04770) | - | 505207..505614 (-) | 408 | WP_000906125.1 | hypothetical protein | - |
| OW489_RS02405 (CHC155_04780) | - | 505617..505859 (-) | 243 | WP_058055270.1 | PP0621 family protein | - |
| OW489_RS02410 (CHC155_04790) | rsmG | 505853..506389 (-) | 537 | WP_001068804.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| OW489_RS02415 (CHC155_04800) | queA | 506386..507423 (-) | 1038 | WP_267286106.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| OW489_RS02420 (CHC155_04810) | tatC | 507424..508185 (-) | 762 | WP_075668198.1 | twin-arginine translocase subunit TatC | - |
| OW489_RS02425 (CHC155_04820) | tatB | 508178..508660 (-) | 483 | WP_267286107.1 | Sec-independent protein translocase protein TatB | - |
| OW489_RS02430 (CHC155_04830) | ruvB | 508728..509738 (-) | 1011 | WP_267286108.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| OW489_RS02435 (CHC155_04840) | panB | 509739..510551 (-) | 813 | WP_120856810.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| OW489_RS02440 (CHC155_04850) | - | 510701..511423 (+) | 723 | WP_120856812.1 | hypothetical protein | - |
| OW489_RS02445 (CHC155_04860) | - | 511413..512267 (+) | 855 | WP_120856814.1 | outer membrane beta-barrel protein | - |
| OW489_RS02450 (CHC155_04870) | - | 512276..513220 (+) | 945 | WP_120856816.1 | outer membrane beta-barrel protein | - |
| OW489_RS02455 (CHC155_04880) | - | 513230..514552 (+) | 1323 | WP_162979413.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37344.33 Da Isoelectric Point: 5.8172
>NTDB_id=80788 OW489_RS02430 WP_267286108.1 508728..509738(-) (ruvB) [Helicobacter pylori strain CHC155]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQENLDHMLFFGPPGLGKTSISYIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQENLDHMLFFGPPGLGKTSISYIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=80788 OW489_RS02430 WP_267286108.1 508728..509738(-) (ruvB) [Helicobacter pylori strain CHC155]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAATTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCTATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGACTTGCCCCCTTTCACTCTCATCGGTGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCCAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTACGCGATTTTGCGTTAGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCTACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAATTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCTATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGACTTGCCCCCTTTCACTCTCATCGGTGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCCAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTACGCGATTTTGCGTTAGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCTACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.321 |
100 |
0.973 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |