Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P4B11_RS14255 | Genome accession | NZ_CP120652 |
| Coordinates | 2833903..2834373 (+) | Length | 156 a.a. |
| NCBI ID | WP_096002306.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 205M | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2828344..2838124 | 2833903..2834373 | within | 0 |
Gene organization within MGE regions
Location: 2828344..2838124
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P4B11_RS14205 (P4B11_14225) | - | 2828344..2828670 (+) | 327 | WP_001025595.1 | hypothetical protein | - |
| P4B11_RS14210 (P4B11_14230) | - | 2828667..2828766 (+) | 100 | Protein_2762 | hypothetical protein | - |
| P4B11_RS14215 (P4B11_14235) | - | 2828915..2829238 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| P4B11_RS14220 (P4B11_14240) | - | 2829235..2829396 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| P4B11_RS14225 (P4B11_14245) | - | 2829491..2829793 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| P4B11_RS14230 (P4B11_14250) | - | 2829798..2830058 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| P4B11_RS14235 (P4B11_14255) | - | 2830067..2830330 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| P4B11_RS14240 (P4B11_14260) | - | 2830339..2832282 (+) | 1944 | WP_404968742.1 | AAA family ATPase | - |
| P4B11_RS14245 (P4B11_14265) | - | 2832284..2833204 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| P4B11_RS14250 (P4B11_14270) | - | 2833285..2833902 (+) | 618 | WP_078065545.1 | MBL fold metallo-hydrolase | - |
| P4B11_RS14255 (P4B11_14275) | ssbA | 2833903..2834373 (+) | 471 | WP_096002306.1 | single-stranded DNA-binding protein | Machinery gene |
| P4B11_RS14260 (P4B11_14280) | - | 2834403..2835287 (+) | 885 | WP_158139158.1 | DnaD domain protein | - |
| P4B11_RS14265 (P4B11_14285) | - | 2835294..2835512 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| P4B11_RS14270 (P4B11_14290) | - | 2835521..2835925 (+) | 405 | Protein_2774 | RusA family crossover junction endodeoxyribonuclease | - |
| P4B11_RS14275 (P4B11_14295) | - | 2835938..2836306 (+) | 369 | WP_000101275.1 | SA1788 family PVL leukocidin-associated protein | - |
| P4B11_RS14280 (P4B11_14300) | - | 2836310..2836552 (+) | 243 | WP_096002304.1 | phi PVL orf 51-like protein | - |
| P4B11_RS14285 (P4B11_14305) | - | 2836567..2836815 (+) | 249 | WP_096002303.1 | DUF1024 family protein | - |
| P4B11_RS14290 (P4B11_14310) | - | 2836808..2837341 (+) | 534 | WP_096002302.1 | dUTP diphosphatase | - |
| P4B11_RS14295 (P4B11_14315) | - | 2837378..2837623 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| P4B11_RS14300 (P4B11_14320) | - | 2837620..2837826 (+) | 207 | WP_404968743.1 | DUF1381 domain-containing protein | - |
| P4B11_RS14305 (P4B11_14325) | rinB | 2837823..2837972 (+) | 150 | WP_031761843.1 | transcriptional activator RinB | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17657.52 Da Isoelectric Point: 5.2672
>NTDB_id=807490 P4B11_RS14255 WP_096002306.1 2833903..2834373(+) (ssbA) [Staphylococcus aureus strain 205M]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=807490 P4B11_RS14255 WP_096002306.1 2833903..2834373(+) (ssbA) [Staphylococcus aureus strain 205M]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTTACATTAGCAGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAATGTAAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTTACATTAGCAGTTAACCGTACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAATGTAAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.802 |
100 |
0.622 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |