Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P6S76_RS18975 Genome accession   NZ_CP120641
Coordinates   3897016..3897534 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain YL2021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3892016..3902534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS18945 - 3893217..3893597 (-) 381 WP_007409891.1 VOC family protein -
  P6S76_RS18950 - 3893649..3894593 (-) 945 WP_007409892.1 LacI family DNA-binding transcriptional regulator -
  P6S76_RS18955 xth 3894656..3895414 (-) 759 WP_007409893.1 exodeoxyribonuclease III -
  P6S76_RS18960 - 3895411..3895968 (-) 558 WP_007409894.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  P6S76_RS18965 - 3895965..3896546 (-) 582 WP_007409895.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  P6S76_RS18970 rpsR 3896733..3896972 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  P6S76_RS18975 ssbA 3897016..3897534 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  P6S76_RS18980 rpsF 3897574..3897861 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  P6S76_RS18985 ychF 3897973..3899073 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  P6S76_RS18990 - 3899200..3901203 (-) 2004 WP_007409896.1 molybdopterin-dependent oxidoreductase -
  P6S76_RS18995 - 3901250..3901456 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=807446 P6S76_RS18975 WP_004392979.1 3897016..3897534(-) (ssbA) [Bacillus velezensis strain YL2021]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=807446 P6S76_RS18975 WP_004392979.1 3897016..3897534(-) (ssbA) [Bacillus velezensis strain YL2021]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTCACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378