Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P6U16_RS01015 Genome accession   NZ_CP120638
Coordinates   200732..201256 (-) Length   174 a.a.
NCBI ID   WP_277702276.1    Uniprot ID   -
Organism   Rhizobium sp. 32-5/1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 195732..206256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6U16_RS00990 (P6U16_00990) coaD 195772..196266 (-) 495 WP_277702271.1 pantetheine-phosphate adenylyltransferase -
  P6U16_RS00995 (P6U16_00995) - 196492..196614 (+) 123 WP_277702272.1 hypothetical protein -
  P6U16_RS01000 (P6U16_01000) - 196626..196784 (+) 159 WP_277702273.1 hypothetical protein -
  P6U16_RS01005 (P6U16_01005) gyrA 196998..199781 (-) 2784 WP_277702274.1 DNA gyrase subunit A -
  P6U16_RS01010 (P6U16_01010) - 200014..200643 (+) 630 WP_277702275.1 MarC family protein -
  P6U16_RS01015 (P6U16_01015) ssb 200732..201256 (-) 525 WP_277702276.1 single-stranded DNA-binding protein Machinery gene
  P6U16_RS01020 (P6U16_01020) uvrA 201527..204446 (+) 2920 Protein_198 excinuclease ABC subunit UvrA -
  P6U16_RS01025 (P6U16_01025) - 204469..205271 (+) 803 Protein_199 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18741.47 Da        Isoelectric Point: 5.3240

>NTDB_id=807365 P6U16_RS01015 WP_277702276.1 200732..201256(-) (ssb) [Rhizobium sp. 32-5/1]
MAGSVNKVILIGNLGADPEIRRTQDGKPIANLNIATSESWRDRNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGATVYI
EGQLQTRKWQDKDGQDRYSTEVVLQGFNSTLTMLGGRGDGQGAGASRGGSDYGSSAGGNFGGGDDYDRPSAPAGRSSGSS
NANFSRDMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=807365 P6U16_RS01015 WP_277702276.1 200732..201256(-) (ssb) [Rhizobium sp. 32-5/1]
ATGGCTGGTAGTGTCAACAAGGTGATTTTGATCGGGAACCTCGGGGCCGACCCGGAAATCCGTCGCACGCAGGACGGCAA
GCCGATCGCCAACCTCAACATCGCCACGTCCGAATCCTGGCGCGACCGCAATTCCGGCGAACGCAAGGAAAAGACCGAAT
GGCATCGTGTGGTGATCTTCAATGAAGGTCTCTGCAAGGTCGCCGAGCAATATCTGAAAAAGGGCGCAACGGTTTACATC
GAGGGCCAGCTGCAGACCCGCAAGTGGCAGGACAAGGACGGCCAGGATCGTTATTCGACCGAAGTTGTGCTCCAGGGCTT
CAATTCGACGCTGACCATGCTTGGCGGTCGTGGCGACGGACAGGGTGCGGGCGCGTCTCGCGGCGGCTCCGACTATGGCA
GCAGCGCCGGCGGCAATTTCGGCGGCGGCGATGACTACGATCGTCCCTCGGCTCCAGCCGGTCGCTCCAGCGGCTCCAGC
AACGCCAACTTCTCGCGCGACATGGATGATGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.381

100

0.534
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.5
  ssb Neisseria meningitidis MC58

40.957

100

0.443
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.42