Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P5623_RS15390 Genome accession   NZ_CP120625
Coordinates   2845708..2846250 (+) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus altitudinis strain DSM 103869     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2840708..2851250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS15365 (P5623_15365) - 2841713..2842123 (-) 411 WP_056703809.1 hypothetical protein -
  P5623_RS15370 (P5623_15370) - 2842139..2843458 (-) 1320 WP_056703812.1 hypothetical protein -
  P5623_RS15375 (P5623_15375) - 2843753..2843959 (+) 207 WP_008347561.1 DUF951 domain-containing protein -
  P5623_RS15380 (P5623_15380) ychF 2844175..2845275 (+) 1101 WP_007497458.1 redox-regulated ATPase YchF -
  P5623_RS15385 (P5623_15385) rpsF 2845384..2845671 (+) 288 WP_008347557.1 30S ribosomal protein S6 -
  P5623_RS15390 (P5623_15390) ssbA 2845708..2846250 (+) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  P5623_RS15395 (P5623_15395) rpsR 2846292..2846531 (+) 240 WP_008347556.1 30S ribosomal protein S18 -
  P5623_RS15400 (P5623_15400) - 2846731..2847696 (+) 966 WP_268414305.1 ABC transporter ATP-binding protein -
  P5623_RS15405 (P5623_15405) - 2847689..2849206 (+) 1518 WP_056703818.1 ABC transporter permease/substrate-binding protein -
  P5623_RS15410 (P5623_15410) - 2849397..2850369 (+) 973 Protein_2886 ring-cleaving dioxygenase -
  P5623_RS15415 (P5623_15415) - 2850366..2850977 (+) 612 WP_024718443.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=807219 P5623_RS15390 WP_007497456.1 2845708..2846250(+) (ssbA) [Bacillus altitudinis strain DSM 103869]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=807219 P5623_RS15390 WP_007497456.1 2845708..2846250(+) (ssbA) [Bacillus altitudinis strain DSM 103869]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361