Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RLT59_RS32855 Genome accession   NZ_CP134612
Coordinates   7204823..7205896 (+) Length   357 a.a.
NCBI ID   WP_311306758.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7199823..7210896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS32825 (RLT59_32825) - 7200382..7200927 (+) 546 WP_311306753.1 hypothetical protein -
  RLT59_RS32830 (RLT59_32830) pdxS 7201093..7202013 (+) 921 WP_311306754.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  RLT59_RS32835 (RLT59_32835) pdxT 7202020..7202613 (+) 594 WP_311306755.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  RLT59_RS32840 (RLT59_32840) - 7202675..7203427 (+) 753 WP_024492903.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RLT59_RS32845 (RLT59_32845) ruvC 7203545..7204117 (+) 573 WP_311306756.1 crossover junction endodeoxyribonuclease RuvC -
  RLT59_RS32850 (RLT59_32850) ruvA 7204114..7204740 (+) 627 WP_311306757.1 Holliday junction branch migration protein RuvA -
  RLT59_RS32855 (RLT59_32855) ruvB 7204823..7205896 (+) 1074 WP_311306758.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RLT59_RS32860 (RLT59_32860) yajC 7206061..7206549 (+) 489 WP_311306759.1 preprotein translocase subunit YajC -
  RLT59_RS32865 (RLT59_32865) secD 7206694..7208430 (+) 1737 WP_311306760.1 protein translocase subunit SecD -
  RLT59_RS32870 (RLT59_32870) secF 7208432..7209556 (+) 1125 WP_311306761.1 protein translocase subunit SecF -
  RLT59_RS32875 (RLT59_32875) - 7209553..7210107 (+) 555 WP_311306762.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38241.64 Da        Isoelectric Point: 4.6689

>NTDB_id=806911 RLT59_RS32855 WP_311306758.1 7204823..7205896(+) (ruvB) [Streptomyces sp. ITFR-6]
MNWDETGPDTDELLDERLVDAGADGEDTAVEAALRPKDLDEFVGQETVREQLDLVLKAARARGATADHVLLSGAPGLGKT
TLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIP
LELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYTPVELERVIHRSARLLDVEMDAEGAAEIAGRSRGTPRIANRLLRR
VRDYAQVKADGRIDRDIAGAALQVYEVDARGLDRLDRAVLGALMKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREG
LLARTPRGRVATPAAWAHLGLVPPQQGGKGQQGLFGA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=806911 RLT59_RS32855 WP_311306758.1 7204823..7205896(+) (ruvB) [Streptomyces sp. ITFR-6]
ATGAACTGGGACGAGACCGGACCCGACACCGACGAGCTGCTCGACGAGCGCCTCGTCGACGCCGGAGCGGACGGCGAGGA
CACCGCCGTGGAGGCGGCACTGCGCCCCAAGGACCTCGACGAGTTCGTCGGCCAGGAGACGGTGCGCGAACAGCTCGACC
TGGTCCTCAAGGCGGCCCGCGCCCGCGGCGCCACCGCCGACCACGTACTGCTCTCCGGCGCCCCCGGCCTGGGCAAGACC
ACCCTCTCCATGATCATCGCCGCCGAGATGGGCGCACCGATCCGGATCACCTCGGGGCCCGCCATCCAGCACGCGGGCGA
CCTCGCGGCGATCCTGTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCG
AGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTGATCGTCGGCAAGGGGCCGGGTGCCACCGCCATCCCG
CTGGAGCTGCCGCCCTTCACCCTGGTCGGCGCCACCACCAGGGCCGGACTCCTGCCGCCCCCGCTGCGCGACCGCTTCGG
CTTCACCGGGCACATGGAGTTCTACACGCCGGTCGAACTGGAAAGGGTGATTCATCGCTCGGCCCGGCTCCTCGACGTCG
AGATGGACGCCGAGGGGGCCGCGGAGATCGCCGGCCGCTCCCGGGGCACGCCCCGGATCGCCAACCGGCTGCTGCGCCGC
GTCCGGGACTACGCCCAGGTCAAGGCCGACGGCCGGATCGACCGGGACATCGCCGGAGCCGCCCTCCAGGTGTACGAGGT
CGACGCCCGCGGGCTCGACCGGCTGGACCGGGCGGTGCTCGGCGCCCTGATGAAGCTCTTCGGCGGCGGTCCCGTCGGCC
TTTCCACGCTCGCGGTCGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCCTTCCTGGTGCGCGAGGGA
CTGCTGGCCAGGACGCCGCGGGGCCGGGTCGCCACACCGGCTGCCTGGGCCCACCTCGGGCTGGTTCCGCCGCAGCAGGG
CGGAAAGGGACAACAGGGCCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)

RuvB AAA lid domain (AAA_lid_4)

(195-268)

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.217

92.997

0.504
  ruvB Streptococcus pneumoniae R6

52.16

90.756

0.473
  ruvB Streptococcus pneumoniae D39

52.16

90.756

0.473
  ruvB Streptococcus pneumoniae TIGR4

52.16

90.756

0.473
  ruvB Synechocystis sp. PCC 6803

53.185

87.955

0.468
  ruvB Helicobacter pylori 26695

49.688

89.636

0.445