Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P5649_RS04900 Genome accession   NZ_CP120613
Coordinates   956893..957411 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain DSM 23521     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 951893..962411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS04880 (P5649_04880) yyzM 952967..953173 (+) 207 WP_003226838.1 DUF951 family protein -
  P5649_RS04885 (P5649_04885) yyaE 953224..955227 (+) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  P5649_RS04890 (P5649_04890) ychF 955354..956454 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  P5649_RS04895 (P5649_04895) rpsF 956565..956852 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  P5649_RS04900 (P5649_04900) ssbA 956893..957411 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  P5649_RS04905 (P5649_04905) rpsR 957455..957694 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  P5649_RS04910 (P5649_04910) xth 957759..958517 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  P5649_RS04915 (P5649_04915) ccpB 958576..959511 (+) 936 WP_003243573.1 transcriptional regulator CcpB -
  P5649_RS04920 (P5649_04920) yyaH 959567..959947 (+) 381 WP_003244460.1 VOC family protein -
  P5649_RS04925 (P5649_04925) maa 959965..960519 (+) 555 WP_003242928.1 sugar O-acetyltransferase -
  P5649_RS04930 (P5649_04930) yyaJ 960553..961908 (-) 1356 WP_003243011.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=806887 P5649_RS04900 WP_003219228.1 956893..957411(+) (ssbA) [Bacillus subtilis strain DSM 23521]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=806887 P5649_RS04900 WP_003219228.1 956893..957411(+) (ssbA) [Bacillus subtilis strain DSM 23521]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378