Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RLT58_RS29945 Genome accession   NZ_CP134609
Coordinates   6726373..6727458 (+) Length   361 a.a.
NCBI ID   WP_311313478.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6721373..6732458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS29915 (RLT58_29915) - 6721972..6722526 (+) 555 WP_311313472.1 hypothetical protein -
  RLT58_RS29920 (RLT58_29920) pdxS 6722685..6723605 (+) 921 WP_311313473.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  RLT58_RS29925 (RLT58_29925) pdxT 6723612..6724205 (+) 594 WP_311313474.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  RLT58_RS29930 (RLT58_29930) - 6724267..6725019 (+) 753 WP_311313475.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RLT58_RS29935 (RLT58_29935) ruvC 6725145..6725714 (+) 570 WP_311313476.1 crossover junction endodeoxyribonuclease RuvC -
  RLT58_RS29940 (RLT58_29940) ruvA 6725711..6726337 (+) 627 WP_311313477.1 Holliday junction branch migration protein RuvA -
  RLT58_RS29945 (RLT58_29945) ruvB 6726373..6727458 (+) 1086 WP_311313478.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RLT58_RS29950 (RLT58_29950) yajC 6727623..6728102 (+) 480 WP_311313479.1 preprotein translocase subunit YajC -
  RLT58_RS29955 (RLT58_29955) secD 6728249..6729991 (+) 1743 WP_311313480.1 protein translocase subunit SecD -
  RLT58_RS29960 (RLT58_29960) secF 6729993..6731111 (+) 1119 WP_311313481.1 protein translocase subunit SecF -
  RLT58_RS29965 (RLT58_29965) - 6731108..6731659 (+) 552 WP_311313482.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38770.23 Da        Isoelectric Point: 4.8567

>NTDB_id=806842 RLT58_RS29945 WP_311313478.1 6726373..6727458(+) (ruvB) [Streptomyces sp. ITFR-16]
MNWDETGPDTDERLGDPFDERLVDAGADGEDTAVEAALRPKDLDEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMNAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLDVEIDVDGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGRIDREIAAAALRVYEVDGRGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHGGKGQQGLFGA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=806842 RLT58_RS29945 WP_311313478.1 6726373..6727458(+) (ruvB) [Streptomyces sp. ITFR-16]
ATGAACTGGGACGAGACCGGACCCGACACCGACGAGCGCCTCGGCGATCCGTTCGACGAGCGGCTTGTCGACGCCGGTGC
GGACGGCGAGGACACGGCGGTCGAGGCGGCGCTGCGGCCCAAGGACCTCGACGAGTTCGTCGGCCAGGAGAAGGTCCGCG
AACAGCTCGACCTGGTCCTCAAGGCGGCCCGCGCCCGCGGCGCCACCGCCGACCACGTGCTGCTCTCCGGTGCCCCGGGA
CTGGGCAAGACGACTCTCTCCATGATCATCGCCGCGGAGATGAACGCGCCGATCCGCATCACCTCGGGCCCCGCCATCCA
GCACGCGGGCGACCTGGCGGCGATCCTGTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCATCGCATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCCATGGAGGACTTCCGGGTCGACGTGATCGTCGGCAAGGGGCCCGGGGCC
ACCGCCATCCCGCTGGAGCTGCCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCGGGCCTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGCCACATGGAGTTCTACGCCCCGGCCGAACTGGAACGGGTGATTCACCGCTCGGCCCGCC
TCCTCGACGTCGAGATCGACGTGGACGGCGCCGCGGAGATCGCGGGACGCTCCCGGGGCACGCCCCGTATCGCCAACCGG
CTGCTGCGCCGGGTGCGGGACTATGCCCAGGTCAAGGCCGAGGGCAGGATCGACCGGGAGATCGCGGCGGCGGCCCTGCG
GGTGTACGAGGTCGACGGCCGGGGACTCGACCGGCTGGACCGGGCGGTGCTCGGCGCCCTGCTGAAGCTCTTCGGCGGCG
GCCCGGTCGGGCTGTCCACGCTCGCGGTCGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAAGGGCTGCTGGCCAGGACGCCGCGCGGCCGGGTCGCCACCCCGGCGGCCTGGGCCCACCTCGGGCTGGTCCC
GCCGCAGCACGGCGGAAAGGGACAACAGGGTCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(199-272)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.453

92.244

0.493
  ruvB Streptococcus pneumoniae TIGR4

52.778

89.751

0.474
  ruvB Streptococcus pneumoniae R6

52.778

89.751

0.474
  ruvB Streptococcus pneumoniae D39

52.778

89.751

0.474
  ruvB Synechocystis sp. PCC 6803

53.503

86.981

0.465
  ruvB Helicobacter pylori 26695

50.629

88.089

0.446