Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RLT58_RS25060 Genome accession   NZ_CP134609
Coordinates   5672571..5673257 (-) Length   228 a.a.
NCBI ID   WP_311312610.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5667571..5678257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS25040 (RLT58_25040) - 5668983..5669798 (-) 816 WP_311312606.1 serine hydrolase domain-containing protein -
  RLT58_RS25045 (RLT58_25045) - 5669890..5670360 (+) 471 WP_311312607.1 MerR family transcriptional regulator -
  RLT58_RS25050 (RLT58_25050) - 5670360..5671376 (+) 1017 WP_311312608.1 aldo/keto reductase -
  RLT58_RS25055 (RLT58_25055) - 5671382..5672428 (-) 1047 WP_311312609.1 alpha/beta hydrolase -
  RLT58_RS25060 (RLT58_25060) vraR 5672571..5673257 (-) 687 WP_311312610.1 response regulator transcription factor Regulator
  RLT58_RS25065 (RLT58_25065) - 5673254..5674507 (-) 1254 WP_399131679.1 sensor histidine kinase -
  RLT58_RS25070 (RLT58_25070) - 5674559..5675518 (-) 960 WP_311312612.1 DUF4429 domain-containing protein -
  RLT58_RS25075 (RLT58_25075) - 5675604..5676815 (-) 1212 WP_311312613.1 alpha/beta hydrolase -
  RLT58_RS25080 (RLT58_25080) - 5677047..5677703 (-) 657 WP_311312614.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 5.7570

>NTDB_id=806835 RLT58_RS25060 WP_311312610.1 5672571..5673257(-) (vraR) [Streptomyces sp. ITFR-16]
MTIRVIIVDDQAMVRAGFAALLAAQPDIEVAGEAPDGRRAIEVSRHVRPDVVLMDVRMPEMDGLAAARALLDPPAGVVHV
PRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAVRVVAAGDALLAPSVTRRLIADFARQGPPSGAGRSGAALRL
NGLTPRETEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYEAGVVVPGTP

Nucleotide


Download         Length: 687 bp        

>NTDB_id=806835 RLT58_RS25060 WP_311312610.1 5672571..5673257(-) (vraR) [Streptomyces sp. ITFR-16]
TTGACCATTCGTGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCGGCACTGCTGGCGGCGCAGCCGGA
CATCGAGGTGGCCGGTGAGGCGCCGGACGGGCGCCGGGCCATCGAGGTCAGCCGCCACGTACGCCCGGACGTGGTGCTGA
TGGATGTCCGGATGCCCGAGATGGACGGCCTGGCCGCCGCACGCGCGCTGCTGGACCCGCCGGCGGGCGTGGTGCATGTG
CCCCGGGTGCTGATGCTCACCACGTTCGACGTGGACGACTATGTGTACGAGGCCCTGCGGGCCGGGGCGTCCGGCTTCCT
GCTCAAGGACGCGCCGCCGGCCGATCTGATCTCGGCGGTCCGCGTGGTGGCCGCCGGTGACGCGCTGCTGGCGCCGTCCG
TGACCCGGCGGCTGATCGCCGACTTCGCCCGGCAGGGGCCGCCCTCCGGCGCGGGCCGCAGCGGGGCCGCGCTGCGGCTG
AACGGGCTGACGCCGCGCGAGACCGAGGTGCTCGAACTGATCGCCAGGGGGCTGTCGAACCAGGAGATAGCCGGGCGGCT
GGTGCTCGCCGAGCAGACCGTGAAGACCCATATCGGGCGGGTGCTGGCCAAGCTGGACCTGCGGGACCGGGCGCAGGCCG
TGATCTTCGCGTACGAGGCGGGTGTGGTGGTGCCGGGCACCCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-217)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.839

98.246

0.382
  degU Bacillus subtilis subsp. subtilis str. 168

36.245

100

0.364