Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RLT58_RS27500 Genome accession   NZ_CP134609
Coordinates   6210593..6213643 (+) Length   1016 a.a.
NCBI ID   WP_311313051.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6205593..6218643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS27480 (RLT58_27480) - 6205821..6207785 (+) 1965 WP_311313047.1 TerD family protein -
  RLT58_RS27485 (RLT58_27485) - 6208038..6209048 (+) 1011 WP_311313048.1 TerC family protein -
  RLT58_RS27490 (RLT58_27490) - 6209061..6209717 (-) 657 WP_311313049.1 MBL fold metallo-hydrolase -
  RLT58_RS27495 (RLT58_27495) - 6209728..6210417 (-) 690 WP_311313050.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  RLT58_RS27500 (RLT58_27500) uvrA 6210593..6213643 (+) 3051 WP_311313051.1 excinuclease ABC subunit UvrA Machinery gene
  RLT58_RS27505 (RLT58_27505) - 6213828..6214256 (+) 429 WP_311313052.1 Rieske (2Fe-2S) protein -
  RLT58_RS27510 (RLT58_27510) - 6214272..6215198 (-) 927 WP_311313053.1 hypothetical protein -
  RLT58_RS27515 (RLT58_27515) - 6215411..6216613 (+) 1203 WP_311313054.1 IS110 family transposase -
  RLT58_RS27520 (RLT58_27520) - 6216850..6217467 (+) 618 WP_311313055.1 papain-like cysteine protease family protein -
  RLT58_RS27525 (RLT58_27525) - 6217472..6218356 (+) 885 WP_311313056.1 hypothetical protein -

Sequence

Protein


Download         Length: 1016 a.a.        Molecular weight: 111525.15 Da        Isoelectric Point: 8.3360

>NTDB_id=806837 RLT58_RS27500 WP_311313051.1 6210593..6213643(+) (uvrA) [Streptomyces sp. ITFR-16]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECHRPISRQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGATVQLSEPPVLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEDKSLDEGAIHPWSHGHTK
EYFGRQINALAEALGFRTDIPWAGLPQRAKKALLHGHKIQTEVRYRNRYGRERAYTTPSFEGAVQFVKRRHSEAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAQVAAMSISECAEFLGRLKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLANDKSITGQYLTGKKSIEMPEVRRPVDPSRLLTVHGARENNLRDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRRLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPTIARHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLIKVL
SGLVDKGNSVIVIEHNLDVIKTADWVIDMGPEGGNGGGLVIAEGTPEYVAGVPASHTGKFLQGILDADRVSEAAVPAARK
PVTRKTAAKKTVAAKSAPARKTAAKATTAKAAMAKTAKTAAAKKPAAKKATRARKA

Nucleotide


Download         Length: 3051 bp        

>NTDB_id=806837 RLT58_RS27500 WP_311313051.1 6210593..6213643(+) (uvrA) [Streptomyces sp. ITFR-16]
GTGGCCGACCGTCTCATCGTCCGTGGCGCTCGCGAGCACAACCTCAAGAACGTCTCGCTCGACCTCCCCCGCGACTCCCT
CATCGTCTTCACCGGACTCTCCGGGTCGGGCAAGTCGTCGCTCGCGTTCGACACGATCTTCGCCGAGGGCCAGCGGCGCT
ACGTGGAGTCCCTCTCCTCGTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGCCTG
TCGCCCGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACGGAGGTCTACGA
CTACCTCCGGCTGCTCTTCGCCAGGATCGGCAAGCCGCACTGCCCCGAGTGCCACCGCCCGATCTCCCGCCAGTCGCCGC
AGGCCATCGTGGACAAGGTCCTCGGCCTGCCCGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGATCTGCAGACCAAGGGGTACAGCAGGGCCAGGGTCGACGGGGCGACGGTCCAGCT
CTCCGAGCCGCCCGTGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGGCTCACGGTGAAGGACAGCG
CCAAGCGCCGGCTGACCGACTCGGTCGAGACCGCGCTCGGCCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGGATGTACTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCCCCCTTCGGCGCCTGCCCCGACTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCCGACGAGGACAAGTCCCTCGACGAGGGCGCGATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGCCGCCAGATCAACGCGCTGGCCGAAGCCCTCGGCTTCCGTACGGACATCCCCTGGGCCGGGCTGCCGCA
GCGCGCCAAGAAGGCCCTGCTGCACGGCCACAAGATCCAGACCGAGGTCCGCTACCGCAACAGGTACGGGCGCGAGCGCG
CCTACACCACGCCCTCCTTCGAAGGCGCGGTCCAGTTCGTCAAGCGGCGGCACTCGGAGGCCGAGAGCGACTCCAGCAGG
GAGCGCTTCGAGGGCTATATGCGCGAGGTGCCCTGCCCGACCTGTGAGGGCACCCGGCTCAAGCCGATCGTCCTCGCGGT
CACGGTGATGGAGAAGTCCATCGCCCAGGTCGCCGCGATGTCGATCAGCGAGTGCGCCGAGTTCCTCGGCCGGCTGAAGC
TGAACGCCCGTGACAAGAAGATCGCCGAGCGCGTCCTCAAGGAGGTCAACGAGCGGCTGAAGTTCCTGGTCGACGTGGGC
CTGGACTACCTCTCGCTGAACCGCGCGGCGGGCACCCTGTCCGGCGGTGAGGCCCAGCGCATCCGGCTCGCCACCCAGAT
CGGCTCCGGCCTGGTCGGCGTGCTGTACGTGCTGGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGA
TCGAGACCCTGGTCCGCCTCCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCG
GACTGGGTCGTGGACATCGGCCCCGGCGCCGGCGAGCACGGCGGCAAGGTGGTCCACTCCGGATCGCTCAAGGAGCTGCT
GGCCAACGACAAGTCGATCACCGGCCAGTATCTGACCGGCAAGAAGTCGATCGAGATGCCCGAGGTCCGGCGCCCAGTCG
ACCCCTCGCGGCTGCTCACGGTCCACGGCGCCCGGGAGAACAACCTCCGGGACATCGACGTCTCCTTCCCGCTCGGCGTG
CTGACCGCCGTCACCGGGGTCTCCGGCTCCGGCAAGTCGACGCTGGTCAACGACATCCTCTACACCCACCTGGCCCGCGA
GCTGAACGGCGCCAAGTCGGTGCCCGGCCGGCACACCCGGGTCGACGGGGACGACCTCGTCGACAAGGTGGTGCACGTCG
ACCAGTCGCCCATCGGCCGTACGCCCCGGTCCAACCCGGCGACGTACACGGGTGTCTTCGACCACGTCCGCAGGCTGTTC
GCGGAGACGATGGAGGCCAAGGTCCGCGGCTATCTGCCGGGCCGGTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCGGACGTGTACGTCCCGTGCGAGGTCTGCCACGGAG
CGCGCTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGGACATGCCGATCGAGGAG
GGCCTGGAGTTCTTCGAGGCCGTCCCGACCATCGCCCGCCATCTGCGCACGCTCAACGAGGTCGGCCTCGGCTATGTGCG
GCTCGGCCAGTCCGCGCCGACGCTCTCCGGCGGCGAGGCCCAGCGCGTGAAGCTGGCGAGCGAGCTCCAGAAGCGCTCCA
CCGGCCGCACGGTCTACGTCCTGGACGAGCCGACCACCGGTCTGCACTTCGAGGACATCTCCAAGCTGATCAAGGTGCTC
TCCGGGCTTGTCGACAAGGGCAACTCGGTGATCGTCATCGAGCACAACCTCGATGTCATCAAGACCGCCGACTGGGTCAT
CGACATGGGTCCCGAAGGGGGCAACGGCGGCGGTCTGGTCATCGCCGAGGGCACCCCGGAGTACGTGGCCGGTGTTCCCG
CCAGCCACACCGGGAAGTTCCTCCAGGGCATTCTGGACGCGGACCGGGTGAGCGAGGCCGCGGTGCCGGCGGCGCGCAAG
CCGGTCACCCGCAAGACGGCCGCGAAGAAGACCGTCGCCGCGAAGTCCGCCCCCGCGAGGAAGACGGCGGCGAAGGCCAC
CACGGCGAAGGCGGCCATGGCGAAGACCGCCAAGACCGCCGCGGCGAAGAAGCCCGCGGCCAAGAAGGCGACCCGCGCCC
GCAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

ABC transporter (ABC_tran)

(629-865)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.375

93.406

0.527
  uvrA Streptococcus pneumoniae TIGR4

56.375

93.406

0.527
  uvrA Streptococcus pneumoniae D39

56.375

93.406

0.527