Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RLT58_RS27470 Genome accession   NZ_CP134609
Coordinates   6202808..6204943 (+) Length   711 a.a.
NCBI ID   WP_311313045.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6197808..6209943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS27445 (RLT58_27445) - 6198799..6199659 (+) 861 WP_311313040.1 class I SAM-dependent methyltransferase -
  RLT58_RS27450 (RLT58_27450) - 6199646..6200008 (+) 363 WP_311313041.1 cupin domain-containing protein -
  RLT58_RS27455 (RLT58_27455) - 6200038..6200580 (-) 543 WP_311313042.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RLT58_RS27460 (RLT58_27460) - 6200652..6201644 (-) 993 WP_311313043.1 glycerophosphodiester phosphodiesterase family protein -
  RLT58_RS27465 (RLT58_27465) - 6201857..6202744 (+) 888 WP_311313044.1 MHYT domain-containing protein -
  RLT58_RS27470 (RLT58_27470) uvrB 6202808..6204943 (+) 2136 WP_311313045.1 excinuclease ABC subunit UvrB Machinery gene
  RLT58_RS27475 (RLT58_27475) - 6205075..6205653 (+) 579 WP_311313046.1 TerD family protein -
  RLT58_RS27480 (RLT58_27480) - 6205821..6207785 (+) 1965 WP_311313047.1 TerD family protein -
  RLT58_RS27485 (RLT58_27485) - 6208038..6209048 (+) 1011 WP_311313048.1 TerC family protein -
  RLT58_RS27490 (RLT58_27490) - 6209061..6209717 (-) 657 WP_311313049.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 79746.63 Da        Isoelectric Point: 4.9848

>NTDB_id=806836 RLT58_RS27470 WP_311313045.1 6202808..6204943(+) (uvrB) [Streptomyces sp. ITFR-16]
MRPVSKIERSVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVQLKVGDEIDRDQLLRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRSLHVFPASHYVAGPERMEKAVTGIEQELGQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRSPGTAPNTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLGRIDQTVYL
SATPGKYELSRGEGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMAQAIDETNRRREKQIAYNTERGLDPQPLRKKINDIVATIAREEVDTEQLLGTGYRQAKGAKTPVPTLGIDAA
PGKAAKAGRAGKAGTAVTDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=806836 RLT58_RS27470 WP_311313045.1 6202808..6204943(+) (uvrB) [Streptomyces sp. ITFR-16]
ATGCGGCCCGTTTCGAAGATCGAACGTTCGGTGGCGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGAGAAGCGCATCCGGGCAGGTGAGAAGGACGTCGTGCTGCTCGGCGCGACCGGCACCGGAA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTGCAGCGCCCCACGCTGGTGATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTCCTGCCCAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGGCGCGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTGGGTACGCCG
CAGGAGTACGTGGACCGGATGGTCCAGCTCAAGGTGGGCGACGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTGGA
GATCCAGTACACCCGCAACGACCTGGCGTTCACCCGGGGAACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGGATCGAGATGTTCGGGGACGAGATCGAGGCGCTCTCCACCCTCCACCCGCTCACCGGC
GAGGTCATCAGCGAGGACCGGTCCCTCCACGTCTTCCCCGCCAGCCACTACGTGGCGGGACCCGAGCGCATGGAGAAGGC
CGTCACGGGCATCGAGCAGGAGCTCGGGCAGCGGCTGGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGTTCCCCCGGCACCGCGCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTCCTGGTGCTCGACGA
GTCGCACGTCACGGTGCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGGAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTGCCGTCCGCCCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCTCGGCCGGATCGACCAGACGGTCTACCTC
TCCGCCACCCCCGGCAAGTACGAGCTCTCCCGGGGCGAGGGCTTCGTGGAGCAGATCATCCGCCCCACCGGCCTGGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGAGTCCTCGTCACCACCCTCACCAAGAAGATGTCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGGATCGAGCTGCTGCGGGAGCTGCGCTCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTCCGTGAGGGCCTCGACCTGCCCGAGGTGTCTCTCGTGGCCATTCTCGACGCCGACAAGCAGG
GCTTCCTGCGCTCGGGCACCTCGCTCATCCAGACCATCGGCCGCGCCGCCCGTAACGTGTCGGGCCAGGTCCATATGTAC
GCGGACAAGATCACCCCGGCGATGGCGCAGGCTATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCCTACAACAC
CGAGCGCGGCCTCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGACGATCGCGCGCGAGGAGGTCGACA
CCGAGCAGCTGCTCGGCACCGGCTACCGCCAGGCGAAGGGCGCCAAGACCCCGGTGCCCACGCTGGGCATCGACGCCGCG
CCGGGCAAGGCGGCGAAGGCCGGCAGGGCCGGCAAGGCCGGGACGGCGGTCACCGACCGCCCGGCCACCGAACTCGCGGG
GATCATCGAGGAGATGACCGACCGGATGCGCGCGGCCGCCGCCGACCTGCAGTTCGAGGTCGCCGCCCGGCTGCGCGACG
AGGTCGGGGAACTGAAGAAGGAGCTGCGCCAGATGAGGGAAGCGGGGCTGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB interaction domain (UvrB_inter)

(168-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(669-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

62.458

84.669

0.529
  uvrB Streptococcus pneumoniae R6

62.458

84.669

0.529
  uvrB Streptococcus pneumoniae D39

62.458

84.669

0.529