Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RLT57_RS03335 Genome accession   NZ_CP134605
Coordinates   763546..764628 (-) Length   360 a.a.
NCBI ID   WP_311295867.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758546..769628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS03315 (RLT57_03315) - 758982..759539 (-) 558 WP_311295863.1 adenine phosphoribosyltransferase -
  RLT57_RS03320 (RLT57_03320) secF 759815..761026 (-) 1212 WP_311295864.1 protein translocase subunit SecF -
  RLT57_RS03325 (RLT57_03325) secD 761026..762807 (-) 1782 WP_311295865.1 protein translocase subunit SecD -
  RLT57_RS03330 (RLT57_03330) yajC 762886..763380 (-) 495 WP_311295866.1 preprotein translocase subunit YajC -
  RLT57_RS03335 (RLT57_03335) ruvB 763546..764628 (-) 1083 WP_311295867.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RLT57_RS03340 (RLT57_03340) ruvA 764743..765354 (-) 612 WP_311295868.1 Holliday junction branch migration protein RuvA -
  RLT57_RS03345 (RLT57_03345) ruvC 765351..765890 (-) 540 WP_311295869.1 crossover junction endodeoxyribonuclease RuvC -
  RLT57_RS03350 (RLT57_03350) - 766013..766765 (-) 753 WP_311295870.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RLT57_RS03355 (RLT57_03355) pdxT 766833..767426 (-) 594 WP_311295871.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  RLT57_RS03360 (RLT57_03360) pdxS 767434..768345 (-) 912 WP_311295872.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  RLT57_RS03365 (RLT57_03365) - 768447..768998 (-) 552 WP_399127955.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38223.65 Da        Isoelectric Point: 5.1703

>NTDB_id=806736 RLT57_RS03335 WP_311295867.1 763546..764628(-) (ruvB) [Streptomyces sp. ITFR-21]
MNWDDATAEPERLVGSAADREDQAVEAALRPKDLGEFIGQERVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMI
IAAEMGAPIRITSGPAIQHAGDLAAILSSLQDGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPP
FTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSAGLLDVEVAADGAAEIAGRSRGTPRIANRLLRRVRDYA
QVRADGVITREIAGQALEVYEVDERGLDRLDRAVLHALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLART
PRGRVATRAAWTHLGLVPPQGAGGAGTGLAGPGQSGLFGG

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=806736 RLT57_RS03335 WP_311295867.1 763546..764628(-) (ruvB) [Streptomyces sp. ITFR-21]
ATGAACTGGGACGACGCCACCGCCGAGCCGGAGCGACTGGTCGGCTCCGCCGCCGACCGCGAGGACCAGGCGGTGGAGGC
GGCGCTGCGGCCCAAGGACCTCGGGGAGTTCATCGGGCAGGAGCGGGTCCGCCAGCAGCTCGACCTGGTGCTCAAGGCGG
CCCGGCAGCGCGGCGCAACCGCCGACCACGTCCTGCTCTCCGGGGCCCCCGGCCTCGGCAAGACCACCCTGTCGATGATC
ATCGCGGCCGAGATGGGCGCGCCGATCCGGATCACCTCGGGCCCGGCCATCCAGCACGCCGGCGACCTCGCCGCGATCCT
GTCCTCGCTCCAGGACGGCGAGGTGCTCTTCCTCGACGAGATCCACCGGATGTCCCGGCCGGCCGAGGAGATGCTCTACA
TGGCGATGGAGGACTTCCGGGTCGACGTGATCGTCGGCAAGGGCCCGGGGGCCACCGCGATCCCGCTGGAACTGCCGCCC
TTCACCCTGGTCGGCGCCACCACCAGGGCCGGCCTGCTGCCGCCGCCGCTGCGCGACCGGTTCGGCTTCACCGGCCACAT
GGAGTTCTACGCCCCCGCCGAACTGGAACGGGTGATCCACCGCTCGGCCGGGCTGCTGGACGTGGAGGTGGCCGCCGACG
GCGCCGCCGAGATCGCCGGGCGCTCCCGCGGCACCCCGCGGATCGCCAACCGGCTGCTGCGCCGGGTCCGCGACTACGCG
CAGGTCAGGGCCGACGGGGTGATCACCAGGGAGATCGCCGGGCAGGCCCTGGAGGTGTACGAGGTGGACGAGCGCGGCCT
GGACCGGCTGGACCGGGCGGTGCTGCACGCCCTGCTGAAGCTGTTCGGCGGCGGCCCGGTCGGCCTGTCGACGCTCGCGG
TCGCGGTCGGCGAGGAGCGGGAGACGGTGGAGGAGGTCGCCGAGCCGTTCCTGGTCCGGGAGGGCCTGCTGGCCCGCACG
CCCCGGGGCCGGGTGGCCACCCGGGCGGCCTGGACGCACCTCGGACTGGTGCCGCCGCAGGGCGCCGGGGGAGCCGGGAC
AGGTTTGGCGGGACCGGGACAGAGCGGGCTGTTCGGCGGGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(264-334)

RuvB AAA lid domain (AAA_lid_4)

(190-263)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.636

91.667

0.492
  ruvB Streptococcus pneumoniae TIGR4

52.16

90

0.469
  ruvB Streptococcus pneumoniae R6

52.16

90

0.469
  ruvB Streptococcus pneumoniae D39

52.16

90

0.469
  ruvB Synechocystis sp. PCC 6803

52.866

87.222

0.461
  ruvB Helicobacter pylori 26695

49.842

88.056

0.439