Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P5661_RS22310 Genome accession   NZ_CP120600
Coordinates   4231563..4232081 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain PRO112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4226563..4237081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS22280 (P5661_22280) yyaJ 4227066..4228421 (+) 1356 WP_015250786.1 MFS transporter -
  P5661_RS22285 (P5661_22285) maa 4228455..4229009 (-) 555 WP_277709188.1 sugar O-acetyltransferase -
  P5661_RS22290 (P5661_22290) yyaH 4229027..4229406 (-) 380 Protein_4331 VOC family protein -
  P5661_RS22295 (P5661_22295) ccpB 4229462..4230397 (-) 936 WP_015715076.1 transcriptional regulator CcpB -
  P5661_RS22300 (P5661_22300) xth 4230457..4231215 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  P5661_RS22305 (P5661_22305) rpsR 4231280..4231519 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  P5661_RS22310 (P5661_22310) ssbA 4231563..4232081 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  P5661_RS22315 (P5661_22315) rpsF 4232122..4232409 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  P5661_RS22320 (P5661_22320) ychF 4232520..4233620 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  P5661_RS22325 (P5661_22325) yyaE 4233747..4235750 (-) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  P5661_RS22330 (P5661_22330) yyzM 4235801..4236007 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=806612 P5661_RS22310 WP_003219228.1 4231563..4232081(-) (ssbA) [Bacillus subtilis strain PRO112]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=806612 P5661_RS22310 WP_003219228.1 4231563..4232081(-) (ssbA) [Bacillus subtilis strain PRO112]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378