Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P5638_RS05705 Genome accession   NZ_CP120599
Coordinates   1157690..1158379 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain PRO114     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152690..1163379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS05685 (P5638_05685) - 1153384..1154451 (+) 1068 WP_024423627.1 MraY family glycosyltransferase -
  P5638_RS05690 (P5638_05690) - 1154487..1155576 (-) 1090 Protein_1083 LCP family protein -
  P5638_RS05695 (P5638_05695) - 1155561..1156229 (-) 669 WP_012011434.1 YigZ family protein -
  P5638_RS05700 (P5638_05700) degS 1156450..1157625 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  P5638_RS05705 (P5638_05705) degU 1157690..1158379 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  P5638_RS05710 (P5638_05710) - 1158595..1159437 (+) 843 WP_277722743.1 DegV family protein -
  P5638_RS05715 (P5638_05715) comFA 1159558..1160955 (+) 1398 WP_277722972.1 DEAD/DEAH box helicase Machinery gene
  P5638_RS05720 (P5638_05720) - 1161004..1161297 (+) 294 WP_024426256.1 competence protein ComFB -
  P5638_RS05725 (P5638_05725) - 1161324..1161812 (+) 489 WP_277722745.1 double zinc ribbon domain-containing protein -
  P5638_RS05730 (P5638_05730) comFC 1161824..1161979 (+) 156 WP_277722747.1 phosphoribosyltransferase family protein Machinery gene
  P5638_RS05735 (P5638_05735) - 1162036..1162455 (+) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  P5638_RS05740 (P5638_05740) flgM 1162535..1162798 (+) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5638_RS05745 (P5638_05745) - 1162817..1163299 (+) 483 WP_034623751.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=806493 P5638_RS05705 WP_008348273.1 1157690..1158379(+) (degU) [Bacillus safensis strain PRO114]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=806493 P5638_RS05705 WP_008348273.1 1157690..1158379(+) (degU) [Bacillus safensis strain PRO114]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACCAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996