Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   P5638_RS05700 Genome accession   NZ_CP120599
Coordinates   1156450..1157625 (+) Length   391 a.a.
NCBI ID   WP_003213166.1    Uniprot ID   -
Organism   Bacillus safensis strain PRO114     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1151450..1162625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS05680 (P5638_05680) - 1152053..1153249 (+) 1197 WP_277722971.1 glycosyltransferase -
  P5638_RS05685 (P5638_05685) - 1153384..1154451 (+) 1068 WP_024423627.1 MraY family glycosyltransferase -
  P5638_RS05690 (P5638_05690) - 1154487..1155576 (-) 1090 Protein_1083 LCP family protein -
  P5638_RS05695 (P5638_05695) - 1155561..1156229 (-) 669 WP_012011434.1 YigZ family protein -
  P5638_RS05700 (P5638_05700) degS 1156450..1157625 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  P5638_RS05705 (P5638_05705) degU 1157690..1158379 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  P5638_RS05710 (P5638_05710) - 1158595..1159437 (+) 843 WP_277722743.1 DegV family protein -
  P5638_RS05715 (P5638_05715) comFA 1159558..1160955 (+) 1398 WP_277722972.1 DEAD/DEAH box helicase Machinery gene
  P5638_RS05720 (P5638_05720) - 1161004..1161297 (+) 294 WP_024426256.1 competence protein ComFB -
  P5638_RS05725 (P5638_05725) - 1161324..1161812 (+) 489 WP_277722745.1 double zinc ribbon domain-containing protein -
  P5638_RS05730 (P5638_05730) comFC 1161824..1161979 (+) 156 WP_277722747.1 phosphoribosyltransferase family protein Machinery gene
  P5638_RS05735 (P5638_05735) - 1162036..1162455 (+) 420 WP_024423621.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45523.25 Da        Isoelectric Point: 5.8757

>NTDB_id=806492 P5638_RS05700 WP_003213166.1 1156450..1157625(+) (degS) [Bacillus safensis strain PRO114]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=806492 P5638_RS05700 WP_003213166.1 1156450..1157625(+) (degS) [Bacillus safensis strain PRO114]
ATGACAACACCCAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGAATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTGAAGCAAATCAAACAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAGCTGGAAGTCCATACAAGACATGCTAGAAACCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGTGAGGCCTACGAAAAAGCACATAACTTGCAAGTGGAACTCACCATGAT
TCAGCAGCGCGAGAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGAAGATTATTAAGCTTACAAGACGTTATTGAAC
GTTCTGAAACGCTTGTGAGTCAGATTACAGTTGTTCTCAACTATCTCAACCAGGATTTACGTCAGGTTGGCGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGGCTGAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGAGTGTCTCGGGA
AATTCATGACGGTCCTGCTCAAATGCTGGCAAACGTGATGATGCGTTCCGAATTAATTGAACGGATTTTTAGAGACCGCG
GTACAGAAGAAGGTTTTAAAGAAATTAGAAGTCTCAGGCAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGTCTGATTCCGACACTGAGAAAATACTTAAACACAATTGAAGAATA
TGATGGGAAAACCAAAATTACGTTCCAATGCCTAGGTGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTAGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCATTAAAACATTCTGAAGCTGAAGAAATCTCTGTCAAAGTAGAAGTA
ACGAAAGACTTTGTGACCTTAATTATTAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCACTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841