Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5638_RS02750 Genome accession   NZ_CP120599
Coordinates   556575..556865 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain PRO114     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 551575..561865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS02735 (P5638_02735) - 551758..552960 (-) 1203 WP_208946145.1 G5 and 3D domain-containing protein -
  P5638_RS02740 (P5638_02740) - 553205..553972 (-) 768 WP_024425634.1 TatD family hydrolase -
  P5638_RS02745 (P5638_02745) metG 554054..556054 (-) 2001 WP_268479357.1 methionine--tRNA ligase -
  P5638_RS02750 (P5638_02750) abrB 556575..556865 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P5638_RS02755 (P5638_02755) rsmI 556911..557792 (-) 882 WP_172881266.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P5638_RS02760 (P5638_02760) - 557767..558066 (-) 300 WP_024425631.1 GIY-YIG nuclease family protein -
  P5638_RS02765 (P5638_02765) - 558053..558796 (-) 744 WP_024427205.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P5638_RS02770 (P5638_02770) yabA 558852..559205 (-) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  P5638_RS02775 (P5638_02775) - 559220..560047 (-) 828 WP_024425628.1 stage 0 sporulation family protein -
  P5638_RS02780 (P5638_02780) holB 560050..561039 (-) 990 WP_034624445.1 DNA polymerase III subunit delta' -
  P5638_RS02785 (P5638_02785) - 561051..561491 (-) 441 WP_277722536.1 YaaR family protein -
  P5638_RS02790 (P5638_02790) - 561504..561833 (-) 330 WP_024425625.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=806484 P5638_RS02750 WP_087975202.1 556575..556865(+) (abrB) [Bacillus safensis strain PRO114]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=806484 P5638_RS02750 WP_087975202.1 556575..556865(+) (abrB) [Bacillus safensis strain PRO114]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938