Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P5622_RS03340 Genome accession   NZ_CP120598
Coordinates   635932..636450 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain PRO115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 630932..641450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS03320 (P5622_03320) yyzM 632006..632212 (+) 207 WP_003226838.1 DUF951 family protein -
  P5622_RS03325 (P5622_03325) yyaE 632263..634266 (+) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  P5622_RS03330 (P5622_03330) ychF 634393..635493 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  P5622_RS03335 (P5622_03335) rpsF 635604..635891 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  P5622_RS03340 (P5622_03340) ssbA 635932..636450 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  P5622_RS03345 (P5622_03345) rpsR 636494..636733 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  P5622_RS03350 (P5622_03350) xth 636797..637555 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  P5622_RS03355 (P5622_03355) ccpB 637614..638549 (+) 936 WP_003243573.1 transcriptional regulator CcpB -
  P5622_RS03360 (P5622_03360) yyaH 638605..638985 (+) 381 WP_003244460.1 VOC family protein -
  P5622_RS03365 (P5622_03365) maa 639003..639557 (+) 555 WP_003242928.1 sugar O-acetyltransferase -
  P5622_RS03370 (P5622_03370) yyaJ 639591..640946 (-) 1356 WP_003243011.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=806414 P5622_RS03340 WP_003219228.1 635932..636450(+) (ssbA) [Bacillus subtilis strain PRO115]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=806414 P5622_RS03340 WP_003219228.1 635932..636450(+) (ssbA) [Bacillus subtilis strain PRO115]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378