Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P5663_RS02835 Genome accession   NZ_CP120590
Coordinates   537783..538283 (+) Length   166 a.a.
NCBI ID   WP_025907886.1    Uniprot ID   -
Organism   Priestia flexa strain PRO116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 532783..543283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5663_RS02805 (P5663_02805) yyaC 533167..533787 (-) 621 WP_061785677.1 spore protease YyaC -
  P5663_RS02810 (P5663_02810) - 533872..534888 (+) 1017 WP_061785678.1 hypothetical protein -
  P5663_RS02815 (P5663_02815) - 534954..535859 (+) 906 WP_277717542.1 mechanosensitive ion channel family protein -
  P5663_RS02820 (P5663_02820) - 535856..536053 (+) 198 WP_025907883.1 DUF951 domain-containing protein -
  P5663_RS02825 (P5663_02825) ychF 536192..537292 (+) 1101 WP_078988995.1 redox-regulated ATPase YchF -
  P5663_RS02830 (P5663_02830) rpsF 537451..537738 (+) 288 WP_025907885.1 30S ribosomal protein S6 -
  P5663_RS02835 (P5663_02835) ssbA 537783..538283 (+) 501 WP_025907886.1 single-stranded DNA-binding protein Machinery gene
  P5663_RS02840 (P5663_02840) rpsR 538345..538584 (+) 240 WP_013059913.1 30S ribosomal protein S18 -
  P5663_RS02845 (P5663_02845) - 538720..539667 (+) 948 WP_076513578.1 YybS family protein -
  P5663_RS02850 (P5663_02850) - 539706..541679 (+) 1974 WP_061785681.1 DHH family phosphoesterase -
  P5663_RS02855 (P5663_02855) rplI 541676..542125 (+) 450 WP_025907889.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18182.93 Da        Isoelectric Point: 4.7821

>NTDB_id=806354 P5663_RS02835 WP_025907886.1 537783..538283(+) (ssbA) [Priestia flexa strain PRO116]
MMNRVILVGRLTKDPELRYTPNGAAVATFTLAVNRAFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDMQRNNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDNDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=806354 P5663_RS02835 WP_025907886.1 537783..538283(+) (ssbA) [Priestia flexa strain PRO116]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTGACGAAAGATCCTGAATTACGTTATACCCCCAATGGAGCTGCAGTTGC
AACATTCACGCTAGCAGTAAACCGCGCATTTACAAATCAACAGGGTGAACGTGAGGCGGACTTTATTAACTGTGTCGTAT
GGCGTCGTCCTGCTGAAAATGTAGCAAACTTTTTGAAAAAAGGTAGTTTAGCTGGTGTTGATGGACGTTTGCAATCTCGT
AGTTATGAAGGACAAGACGGTCGTCGAGTTTATGTAACAGAGGTTGTGGCAGAAAGTGTGCAATTCTTAGAACCAAAAAG
TGGTGGCGGGGATATGCAACGCAATAACTTTGCTAACACTGGTGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATAATGATCCATTTGCAAATAATGGTGAAACAATCGACATCTCT
GATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72

100

0.759
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.361