Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   P5628_RS18250 Genome accession   NZ_CP120577
Coordinates   3502284..3503441 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain PRO53     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3497284..3508441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS18220 (P5628_18220) yvyF 3497538..3497957 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  P5628_RS18225 (P5628_18225) comFC 3498030..3498752 (-) 723 WP_032726962.1 comF operon protein ComFC Machinery gene
  P5628_RS18230 (P5628_18230) comFB 3498716..3499012 (-) 297 WP_003227989.1 late competence protein ComFB -
  P5628_RS18235 (P5628_18235) comFA 3499072..3500463 (-) 1392 WP_249852325.1 ATP-dependent helicase ComFA Machinery gene
  P5628_RS18240 (P5628_18240) fakBA 3500569..3501414 (-) 846 WP_003244125.1 DegV family protein -
  P5628_RS18245 (P5628_18245) degU 3501512..3502201 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5628_RS18250 (P5628_18250) degS 3502284..3503441 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5628_RS18255 (P5628_18255) yvyE 3503658..3504311 (+) 654 WP_003227979.1 YigZ family protein -
  P5628_RS18260 (P5628_18260) tagV 3504311..3505477 (+) 1167 WP_277709074.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  P5628_RS18265 (P5628_18265) tagO 3505548..3506624 (-) 1077 WP_032726968.1 MraY family glycosyltransferase -
  P5628_RS18270 (P5628_18270) tuaH 3506769..3507962 (-) 1194 WP_080286269.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=806335 P5628_RS18250 WP_003227983.1 3502284..3503441(-) (degS) [Bacillus subtilis strain PRO53]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=806335 P5628_RS18250 WP_003227983.1 3502284..3503441(-) (degS) [Bacillus subtilis strain PRO53]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGGATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1