Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P5628_RS18225 Genome accession   NZ_CP120577
Coordinates   3498030..3498752 (-) Length   240 a.a.
NCBI ID   WP_032726962.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3493030..3503752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS18190 (P5628_18190) fliW 3493170..3493601 (-) 432 WP_032726959.1 flagellar assembly protein FliW -
  P5628_RS18195 (P5628_18195) yviE 3493622..3494197 (-) 576 WP_277709072.1 DUF6470 family protein -
  P5628_RS18200 (P5628_18200) flgL 3494244..3495140 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  P5628_RS18205 (P5628_18205) flgK 3495151..3496674 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  P5628_RS18210 (P5628_18210) flgN 3496693..3497175 (-) 483 WP_014481048.1 flagellar protein FlgN -
  P5628_RS18215 (P5628_18215) flgM 3497191..3497457 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5628_RS18220 (P5628_18220) yvyF 3497538..3497957 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  P5628_RS18225 (P5628_18225) comFC 3498030..3498752 (-) 723 WP_032726962.1 comF operon protein ComFC Machinery gene
  P5628_RS18230 (P5628_18230) comFB 3498716..3499012 (-) 297 WP_003227989.1 late competence protein ComFB -
  P5628_RS18235 (P5628_18235) comFA 3499072..3500463 (-) 1392 WP_249852325.1 ATP-dependent helicase ComFA Machinery gene
  P5628_RS18240 (P5628_18240) fakBA 3500569..3501414 (-) 846 WP_003244125.1 DegV family protein -
  P5628_RS18245 (P5628_18245) degU 3501512..3502201 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5628_RS18250 (P5628_18250) degS 3502284..3503441 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27558.85 Da        Isoelectric Point: 9.3157

>NTDB_id=806332 P5628_RS18225 WP_032726962.1 3498030..3498752(-) (comFC) [Bacillus subtilis strain PRO53]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKICYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNHSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=806332 P5628_RS18225 WP_032726962.1 3498030..3498752(-) (comFC) [Bacillus subtilis strain PRO53]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGATTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATCATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983