Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P5628_RS18245 Genome accession   NZ_CP120577
Coordinates   3501512..3502201 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain PRO53     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3496512..3507201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS18210 (P5628_18210) flgN 3496693..3497175 (-) 483 WP_014481048.1 flagellar protein FlgN -
  P5628_RS18215 (P5628_18215) flgM 3497191..3497457 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5628_RS18220 (P5628_18220) yvyF 3497538..3497957 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  P5628_RS18225 (P5628_18225) comFC 3498030..3498752 (-) 723 WP_032726962.1 comF operon protein ComFC Machinery gene
  P5628_RS18230 (P5628_18230) comFB 3498716..3499012 (-) 297 WP_003227989.1 late competence protein ComFB -
  P5628_RS18235 (P5628_18235) comFA 3499072..3500463 (-) 1392 WP_249852325.1 ATP-dependent helicase ComFA Machinery gene
  P5628_RS18240 (P5628_18240) fakBA 3500569..3501414 (-) 846 WP_003244125.1 DegV family protein -
  P5628_RS18245 (P5628_18245) degU 3501512..3502201 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P5628_RS18250 (P5628_18250) degS 3502284..3503441 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P5628_RS18255 (P5628_18255) yvyE 3503658..3504311 (+) 654 WP_003227979.1 YigZ family protein -
  P5628_RS18260 (P5628_18260) tagV 3504311..3505477 (+) 1167 WP_277709074.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  P5628_RS18265 (P5628_18265) tagO 3505548..3506624 (-) 1077 WP_032726968.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=806334 P5628_RS18245 WP_003219701.1 3501512..3502201(-) (degU) [Bacillus subtilis strain PRO53]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=806334 P5628_RS18245 WP_003219701.1 3501512..3502201(-) (degU) [Bacillus subtilis strain PRO53]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCGGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1