Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P5628_RS08885 Genome accession   NZ_CP120577
Coordinates   1686831..1687610 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain PRO53     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681831..1692610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS08865 (P5628_08865) trmFO 1682524..1683831 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P5628_RS08870 (P5628_08870) xerC 1683899..1684813 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  P5628_RS08875 (P5628_08875) clpQ 1684826..1685371 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  P5628_RS08880 (P5628_08880) hslU 1685379..1686791 (+) 1413 WP_258712685.1 HslU--HslV peptidase ATPase subunit -
  P5628_RS08885 (P5628_08885) codY 1686831..1687610 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P5628_RS08890 (P5628_08890) flgB 1687990..1688379 (+) 390 WP_144531066.1 flagellar basal body rod protein FlgB -
  P5628_RS08895 (P5628_08895) flgC 1688379..1688831 (+) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  P5628_RS08900 (P5628_08900) fliE 1688842..1689162 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  P5628_RS08905 (P5628_08905) fliF 1689208..1690818 (+) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  P5628_RS08910 (P5628_08910) fliG 1690831..1691847 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  P5628_RS08915 (P5628_08915) fliH 1691840..1692592 (+) 753 WP_175288690.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=806299 P5628_RS08885 WP_003220850.1 1686831..1687610(+) (codY) [Bacillus subtilis strain PRO53]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=806299 P5628_RS08885 WP_003220850.1 1686831..1687610(+) (codY) [Bacillus subtilis strain PRO53]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467