Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5628_RS08025 Genome accession   NZ_CP120577
Coordinates   1514574..1514852 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain PRO53     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509574..1519852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS08005 (P5628_08005) - 1510762..1511673 (+) 912 WP_103803558.1 ketopantoate reductase family protein -
  P5628_RS08010 (P5628_08010) ampS 1511707..1512939 (-) 1233 WP_003232341.1 aminopeptidase -
  P5628_RS08015 (P5628_08015) ykpC 1513048..1513182 (-) 135 WP_003238865.1 protein YkpC -
  P5628_RS08020 (P5628_08020) mreBH 1513283..1514290 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  P5628_RS08025 (P5628_08025) abrB 1514574..1514852 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  P5628_RS08030 (P5628_08030) kinC 1515042..1516328 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  P5628_RS08035 (P5628_08035) ykqA 1516344..1517171 (+) 828 WP_038829604.1 gamma-glutamylcyclotransferase -
  P5628_RS08040 (P5628_08040) ktrC 1517234..1517899 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  P5628_RS08045 (P5628_08045) ade 1518055..1519788 (+) 1734 WP_015715822.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=806297 P5628_RS08025 WP_003244728.1 1514574..1514852(+) (abrB) [Bacillus subtilis strain PRO53]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=806297 P5628_RS08025 WP_003244728.1 1514574..1514852(+) (abrB) [Bacillus subtilis strain PRO53]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576