Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P5628_RS08855 Genome accession   NZ_CP120577
Coordinates   1679292..1680185 (+) Length   297 a.a.
NCBI ID   WP_038828237.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1674292..1685185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS08835 (P5628_08835) - 1674962..1676692 (+) 1731 WP_277715535.1 hypothetical protein -
  P5628_RS08840 (P5628_08840) ylqH 1676689..1676970 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  P5628_RS08845 (P5628_08845) sucC 1677143..1678300 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  P5628_RS08850 (P5628_08850) sucD 1678329..1679231 (+) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  P5628_RS08855 (P5628_08855) dprA 1679292..1680185 (+) 894 WP_038828237.1 DNA-processing protein DprA Machinery gene
  P5628_RS08860 (P5628_08860) topA 1680373..1682448 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  P5628_RS08865 (P5628_08865) trmFO 1682524..1683831 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P5628_RS08870 (P5628_08870) xerC 1683899..1684813 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32860.20 Da        Isoelectric Point: 10.0054

>NTDB_id=806298 P5628_RS08855 WP_038828237.1 1679292..1680185(+) (dprA) [Bacillus subtilis strain PRO53]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLAAHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=806298 P5628_RS08855 WP_038828237.1 1679292..1680185(+) (dprA) [Bacillus subtilis strain PRO53]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGCTCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377