Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P5628_RS11145 Genome accession   NZ_CP120577
Coordinates   2169966..2170586 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2164966..2175586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS11105 (P5628_11105) ypqE 2166097..2166603 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  P5628_RS11110 (P5628_11110) ypqA 2166741..2167160 (+) 420 WP_038828605.1 Hsp20/alpha crystallin family protein -
  P5628_RS11115 (P5628_11115) yppG 2167181..2167558 (-) 378 WP_015251832.1 YppG family protein -
  P5628_RS11120 (P5628_11120) yppF 2167746..2167934 (+) 189 WP_003230690.1 YppF family protein -
  P5628_RS11125 (P5628_11125) yppE 2167973..2168344 (-) 372 WP_021481525.1 YppE family protein -
  P5628_RS11130 (P5628_11130) yppD 2168390..2168635 (-) 246 WP_277708763.1 YppD family protein -
  P5628_RS11135 (P5628_11135) sspM 2168834..2168938 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  P5628_RS11140 (P5628_11140) yppC 2168963..2169925 (-) 963 WP_064671082.1 DUF2515 domain-containing protein -
  P5628_RS11145 (P5628_11145) recU 2169966..2170586 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  P5628_RS11150 (P5628_11150) ponA 2170608..2173367 (+) 2760 WP_277708764.1 PBP1A family penicillin-binding protein -
  P5628_RS11155 (P5628_11155) ypoC 2173444..2173938 (-) 495 WP_120028311.1 YpoC family protein -
  P5628_RS11160 (P5628_11160) nth 2173935..2174594 (-) 660 WP_009967580.1 endonuclease III -
  P5628_RS11165 (P5628_11165) dnaD 2174613..2175311 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=806302 P5628_RS11145 WP_004399067.1 2169966..2170586(+) (recU) [Bacillus subtilis strain PRO53]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=806302 P5628_RS11145 WP_004399067.1 2169966..2170586(+) (recU) [Bacillus subtilis strain PRO53]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1