Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3L54_RS02630 Genome accession   NZ_CP120535
Coordinates   603911..604432 (+) Length   173 a.a.
NCBI ID   WP_094961402.1    Uniprot ID   -
Organism   Providencia sp. PROV099     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 598911..609432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L54_RS02620 (P3L54_02620) - 599326..600522 (+) 1197 WP_110592476.1 aromatic amino acid transaminase -
  P3L54_RS02625 (P3L54_02625) uvrA 600603..603437 (-) 2835 WP_110592475.1 excinuclease ABC subunit UvrA -
  P3L54_RS02630 (P3L54_02630) ssb 603911..604432 (+) 522 WP_094961402.1 single-stranded DNA-binding protein Machinery gene
  P3L54_RS02635 (P3L54_02635) - 604717..605124 (-) 408 WP_110592474.1 helix-turn-helix domain-containing protein -
  P3L54_RS02640 (P3L54_02640) - 605367..606539 (-) 1173 WP_110592473.1 MFS transporter -
  P3L54_RS02645 (P3L54_02645) ivbL 606871..606960 (+) 90 WP_099975407.1 ilvB operon leader peptide IvbL -
  P3L54_RS02650 (P3L54_02650) ilvB 607064..608761 (+) 1698 WP_110592472.1 acetolactate synthase large subunit -
  P3L54_RS02655 (P3L54_02655) ilvN 608764..609048 (+) 285 WP_004260877.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18525.53 Da        Isoelectric Point: 4.9468

>NTDB_id=806104 P3L54_RS02630 WP_094961402.1 603911..604432(+) (ssb) [Providencia sp. PROV099]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=806104 P3L54_RS02630 WP_094961402.1 603911..604432(+) (ssb) [Providencia sp. PROV099]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCGGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATA
GAAGGTTCTTTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
CGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCGCAAGCAGCACAGCAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCGCCTGCTCCACAGACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

47.458

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.486