Detailed information NTG0806085

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RKQ55_RS04490
• Genome accession: NZ_CP134586
• Coordinates: 957319..958323 (-)
• Length: 334 a.a.
• NCBI ID: WP_001154002.1
• Uniprot ID: A3M7W1
• Organism: Acinetobacter baumannii strain XH1026
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 952319..963323

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ55_RS04465 (RKQ55_04495)	tolA	952637..953983 (-)	1347	WP_005128116.1	cell envelope integrity protein TolA	-
RKQ55_RS04470 (RKQ55_04500)	tolR	953987..954439 (-)	453	WP_001007562.1	protein TolR	-
RKQ55_RS04475 (RKQ55_04505)	tolQ	954439..955137 (-)	699	WP_000224630.1	protein TolQ	-
RKQ55_RS04480 (RKQ55_04510)	ybgC	955161..955568 (-)	408	WP_001273591.1	tol-pal system-associated acyl-CoA thioesterase	-
RKQ55_RS04485 (RKQ55_04515)	-	955779..957113 (-)	1335	Protein_857	M20 family metallopeptidase	-
RKQ55_RS04490 (RKQ55_04520)	ruvB	957319..958323 (-)	1005	WP_001154002.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RKQ55_RS04495 (RKQ55_04525)	ruvA	958332..958931 (-)	600	WP_000578663.1	Holliday junction branch migration protein RuvA	-
RKQ55_RS04500 (RKQ55_04530)	-	959023..960363 (-)	1341	WP_000437078.1	deoxyguanosinetriphosphate triphosphohydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36815.05 Da
• Isoelectric Point: 4.7936

>NTDB_id=806085 RKQ55_RS04490 WP_001154002.1 957319..958323(-) (ruvB) [Acinetobacter baumannii strain XH1026]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide

• Length: 1005 bp

>NTDB_id=806085 RKQ55_RS04490 WP_001154002.1 957319..958323(-) (ruvB) [Acinetobacter baumannii strain XH1026]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAAGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTGACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAAATTCACCGTCTTTCACCAGTGATTGAAGAAATTCTTTATCCGGCAATGGAAGATTACCAACTTGATA
TCATGATTGGTGAAGGTCCTGCTGCTCGTTCAATTAAACTCGATTTACCACCTTTTACGCTCGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCTCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACTTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACGGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTTAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGCTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGTGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-322)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: A3M7W1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	57.704	99.102	0.572
ruvB	Synechocystis sp. PCC 6803	57.325	94.012	0.539
ruvB	Streptococcus pneumoniae TIGR4	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae R6	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae D39	56.113	95.509	0.536
ruvB	Helicobacter pylori 26695	54.934	91.018	0.5