Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   P3R60_RS09040 Genome accession   NZ_CP120510
Coordinates   1746637..1748853 (+) Length   738 a.a.
NCBI ID   WP_316606256.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1741637..1753853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS09010 - 1742630..1742890 (-) 261 WP_160544383.1 GIY-YIG nuclease family protein -
  P3R60_RS09015 - 1742887..1743645 (-) 759 WP_316606254.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P3R60_RS09020 - 1743902..1744435 (+) 534 WP_278023903.1 isoprenylcysteine carboxyl methyltransferase family protein -
  P3R60_RS09025 - 1744792..1744980 (-) 189 WP_160544380.1 hypothetical protein -
  P3R60_RS09030 - 1745139..1745888 (+) 750 WP_278023900.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  P3R60_RS09035 - 1745958..1746629 (+) 672 WP_316606255.1 helix-hairpin-helix domain-containing protein -
  P3R60_RS09040 comEC/celB 1746637..1748853 (+) 2217 WP_316606256.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P3R60_RS09045 - 1748976..1750511 (+) 1536 WP_316606257.1 acyl-CoA synthetase -
  P3R60_RS09050 - 1750659..1751555 (+) 897 WP_316606258.1 ABC transporter ATP-binding protein -
  P3R60_RS09055 - 1751539..1752270 (+) 732 WP_218653512.1 ABC transporter permease -
  P3R60_RS09060 - 1752489..1753361 (+) 873 WP_316606259.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 83551.13 Da        Isoelectric Point: 9.4799

>NTDB_id=805876 P3R60_RS09040 WP_316606256.1 1746637..1748853(+) (comEC/celB) [Streptococcus pluranimalium strain SP21-2]
MLKPIYLAFLVALTYFVILIKSWVVILLSLLAVIALFRQYSKKAIIQTIVILTLFVAYFTFLGNKQVQLEKQLPSQVSTL
RVIPDSISVDGDLLSARAEEGKQRYQLYYQLQTESEKEYFQNLNQLILLKVVASVEKPQGQRNFKGFDYKTYLKREGIYG
IVQVEKVNAIHTVAPQNLEEWVRLWRRKLLIHINQHFPEPMKHYMTGLLLGYLDKSFDEMSDIYTDLGIIHLFALSGMQV
GFFVGIFRTILLRLGLLREHFLYVLLPFSFIYAGLTGFTISVVRSLLQAILSQFGLRKWDNLGTTILILFLLSPHFLITT
GGVLSFAYAFILSTLDLDTLSGSRKAVVESMVLSLGILPLLVFYFGTFQPLSILLTGFFSVIFDVFLLPLLSLVLLASPI
VSLDFFNPCFYFLESVIKWTVHLSPRPLVFGSPNLTVLLLMLISLAVVHDFWHDKKLRYCLLVAVVALFAVTKNPLENEV
TVLDVGQGDSIFIRDIRGKTLLIDTGGRVDFTQKEEWRRRQKTANAERTSIPYLKSRGISSIDQLVITHTDADHMGDMAV
LAKQFNIKEVLVSPGALSNPSFVKVLKSLKIKVGLLQAGDQIAIMGSSLQVLYPWDQGDGGNNDSLVLYGKLLNKRFLFT
GDLEVDGEKSLMMRYPNLPVDILKAGHHGSKGSSDPDFLKHIGAKVVLISAGLNNRYQHPNDETLERFEAEKMMVYRTDQ
EGAIRYRGIKNWKVETVH

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=805876 P3R60_RS09040 WP_316606256.1 1746637..1748853(+) (comEC/celB) [Streptococcus pluranimalium strain SP21-2]
ATGTTAAAGCCAATTTACTTGGCTTTTTTAGTAGCTTTGACCTATTTTGTAATCTTGATTAAATCCTGGGTTGTCATTTT
GCTATCTTTGCTTGCCGTTATCGCTTTATTCAGACAATATTCTAAAAAGGCAATTATACAGACGATTGTTATCCTTACTC
TATTTGTTGCGTATTTTACTTTTTTGGGGAACAAGCAGGTTCAGCTGGAAAAGCAGCTCCCAAGTCAAGTGTCGACCTTG
CGAGTAATACCTGACAGCATTTCTGTAGATGGTGATTTATTATCTGCGCGTGCTGAAGAAGGTAAGCAAAGGTATCAGCT
TTATTATCAATTACAGACGGAATCGGAAAAGGAGTATTTTCAAAATCTTAATCAGCTGATCCTTTTAAAGGTAGTGGCTT
CAGTCGAGAAGCCGCAAGGTCAGCGCAATTTTAAAGGTTTTGATTATAAGACTTATTTGAAACGAGAAGGCATTTATGGC
ATCGTTCAAGTCGAGAAAGTTAACGCCATTCATACGGTTGCTCCTCAAAACCTAGAGGAATGGGTTAGACTGTGGCGACG
AAAACTTTTGATCCACATCAATCAACACTTTCCTGAGCCTATGAAACACTATATGACGGGACTTTTGTTGGGTTATTTGG
ATAAGTCTTTTGACGAGATGAGTGATATCTATACGGATTTGGGGATTATTCATCTTTTTGCCCTGTCTGGCATGCAGGTG
GGCTTTTTTGTCGGTATTTTTCGGACGATCCTTTTACGTCTAGGGCTTTTGAGGGAGCATTTTTTGTATGTTCTTCTGCC
ATTTTCCTTTATTTACGCTGGTCTAACAGGATTCACGATTTCTGTGGTACGAAGCTTATTACAGGCCATTCTCAGTCAAT
TTGGCTTGCGAAAATGGGATAATTTAGGAACAACCATCTTGATATTGTTCCTGCTATCGCCCCATTTTCTGATTACAACA
GGAGGTGTTTTATCTTTTGCTTATGCCTTCATACTGTCTACCTTAGATTTAGACACTTTGTCAGGAAGCCGCAAAGCAGT
AGTAGAAAGTATGGTACTTTCACTAGGTATTCTACCCTTGTTGGTATTTTATTTCGGGACTTTTCAACCTCTGTCCATTC
TTTTAACAGGATTCTTTTCAGTGATTTTTGATGTCTTTCTGTTACCCTTGTTAAGTCTTGTGTTATTAGCCAGTCCGATA
GTATCTCTAGACTTTTTTAATCCTTGCTTTTACTTTTTAGAATCAGTTATCAAGTGGACGGTACATTTGTCTCCTCGCCC
CTTGGTTTTTGGTAGTCCTAACTTAACTGTACTTCTATTAATGCTTATTTCTTTAGCTGTTGTACATGATTTTTGGCATG
ATAAAAAATTGAGGTACTGTTTGTTGGTTGCTGTAGTTGCCTTGTTTGCTGTGACGAAAAACCCTTTAGAAAATGAGGTG
ACTGTTCTAGATGTTGGGCAAGGAGATTCGATTTTCATTAGGGATATCAGGGGGAAAACCTTGCTTATTGATACGGGAGG
CCGAGTTGATTTTACTCAGAAAGAGGAGTGGCGCAGGCGGCAGAAAACAGCTAATGCTGAACGGACATCCATCCCCTATC
TGAAAAGTCGAGGGATTTCGTCCATCGACCAGCTTGTGATTACACACACTGATGCAGATCACATGGGAGATATGGCAGTT
CTAGCCAAGCAGTTTAACATTAAGGAAGTTTTGGTTAGTCCAGGTGCTCTGTCCAATCCCTCTTTTGTAAAAGTGCTAAA
ATCATTGAAAATCAAAGTAGGATTGCTTCAAGCTGGGGATCAGATTGCGATTATGGGGTCTTCTCTTCAAGTTCTCTACC
CGTGGGATCAGGGAGATGGTGGAAATAACGATTCCTTGGTCTTATATGGAAAGTTATTAAATAAACGATTTCTTTTTACG
GGAGATTTAGAAGTTGATGGCGAAAAATCCTTGATGATGAGGTATCCCAACTTACCCGTTGATATTTTAAAAGCTGGGCA
CCATGGCTCTAAAGGATCCTCTGATCCAGACTTTTTAAAACATATCGGAGCAAAAGTCGTTTTGATTTCAGCTGGTCTTA
ATAATCGTTACCAGCATCCCAATGATGAAACCTTAGAGCGCTTTGAAGCAGAAAAGATGATGGTTTATAGGACCGATCAA
GAAGGGGCAATTCGTTACAGAGGCATAAAGAATTGGAAAGTTGAAACGGTTCATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-168)

Metallo-beta-lactamase superfamily (Lactamase_B)

(484-690)

Competence protein (Competence)

(208-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

48.645

100

0.486
  comEC/celB Streptococcus mitis NCTC 12261

48.711

99.864

0.486
  comEC/celB Streptococcus pneumoniae TIGR4

47.154

100

0.472
  comEC/celB Streptococcus pneumoniae D39

47.019

100

0.47
  comEC/celB Streptococcus pneumoniae Rx1

47.019

100

0.47
  comEC/celB Streptococcus pneumoniae R6

47.019

100

0.47
  comEC Lactococcus lactis subsp. cremoris KW2

43.666

100

0.439