Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   P3R60_RS03660 Genome accession   NZ_CP120510
Coordinates   742497..743186 (-) Length   229 a.a.
NCBI ID   WP_316606668.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 737497..748186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS03640 dnaI 738002..738904 (-) 903 WP_218654048.1 primosomal protein DnaI -
  P3R60_RS03645 - 738907..740079 (-) 1173 WP_104967320.1 DnaD domain protein -
  P3R60_RS03650 nrdR 740079..740552 (-) 474 WP_104968798.1 transcriptional regulator NrdR -
  P3R60_RS03655 - 740996..742453 (-) 1458 WP_256866665.1 HAMP domain-containing histidine kinase -
  P3R60_RS03660 covR 742497..743186 (-) 690 WP_316606668.1 response regulator transcription factor Regulator
  P3R60_RS03665 - 743419..743952 (-) 534 WP_218654046.1 DUF177 domain-containing protein -
  P3R60_RS03670 htpX 743987..744892 (-) 906 WP_218654045.1 zinc metalloprotease HtpX -
  P3R60_RS03675 rsmG 745007..745720 (+) 714 WP_160545032.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  P3R60_RS03680 - 745745..747118 (+) 1374 WP_218654044.1 TrkH family potassium uptake protein -
  P3R60_RS03685 - 747137..747808 (+) 672 WP_278024987.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26342.13 Da        Isoelectric Point: 4.7749

>NTDB_id=805844 P3R60_RS03660 WP_316606668.1 742497..743186(-) (covR) [Streptococcus pluranimalium strain SP21-2]
MSKNILIIEDEKNLSRFVSLELQHEGYSVTIESNGRAGLETALDKDFDLILLDLMLPEMDGFEVTRRLQQEKSTYIIMMT
ARDSVMDIVSGLDRGADDYIIKPFAIEELLARVRAAFRRQEIEESKRNASGGASYRDLKLDPQNRSVVRGDETVPLTKRE
FDLLSALMSNMNRVMTREELLNLVWKYDEAVETNVVDVYIRYLRGKIDVSGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=805844 P3R60_RS03660 WP_316606668.1 742497..743186(-) (covR) [Streptococcus pluranimalium strain SP21-2]
ATGTCAAAAAATATTCTGATCATAGAGGATGAGAAAAATCTTTCGCGCTTCGTTTCTTTAGAATTACAGCATGAAGGGTA
TTCGGTAACCATTGAAAGTAATGGTCGCGCTGGTTTAGAAACAGCATTAGATAAAGATTTTGATTTGATTTTATTAGACT
TGATGTTGCCAGAGATGGATGGCTTTGAAGTGACACGTCGCTTACAACAAGAAAAGTCAACTTACATCATTATGATGACT
GCTAGAGACTCTGTTATGGATATTGTTTCAGGATTGGATCGTGGTGCAGACGATTATATTATCAAGCCATTTGCGATTGA
GGAACTCTTAGCGCGTGTTCGTGCTGCTTTTCGTCGTCAAGAAATTGAAGAAAGTAAACGAAATGCTTCAGGTGGAGCTA
GCTATCGTGACCTCAAATTGGATCCACAGAATCGCTCGGTTGTTCGCGGGGATGAAACAGTTCCTTTAACAAAACGTGAG
TTTGATTTGTTATCTGCTTTGATGTCTAACATGAACCGTGTCATGACACGTGAAGAATTATTAAATCTTGTCTGGAAGTA
TGATGAAGCTGTAGAAACAAATGTTGTTGATGTCTACATTCGTTATCTTCGTGGCAAGATTGATGTCTCTGGTAAAGAAT
CATACATTCAAACTGTCCGTGGTATGGGTTATGTCATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

81.659

100

0.817
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.982

99.563

0.677
  vicR Streptococcus mutans UA159

44.156

100

0.445
  micA Streptococcus pneumoniae Cp1015

42.308

100

0.432