Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RKQ58_RS02520 Genome accession   NZ_CP134579
Coordinates   336064..336513 (+) Length   149 a.a.
NCBI ID   WP_114155191.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331064..341513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKQ58_RS02490 (RKQ58_02490) - 331528..333633 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RKQ58_RS02495 (RKQ58_02495) - 333672..333802 (-) 131 Protein_304 hypothetical protein -
  RKQ58_RS02500 (RKQ58_02500) rpoZ 333841..334119 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RKQ58_RS02505 (RKQ58_02505) gmk 334192..334821 (-) 630 WP_000015937.1 guanylate kinase -
  RKQ58_RS02510 (RKQ58_02510) ispH 334944..335894 (+) 951 WP_114159399.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RKQ58_RS02515 (RKQ58_02515) - 335907..336158 (-) 252 Protein_308 hypothetical protein -
  RKQ58_RS02520 (RKQ58_02520) fimU 336064..336513 (+) 450 WP_114155191.1 GspH/FimT family pseudopilin Machinery gene
  RKQ58_RS02525 (RKQ58_02525) pilV 336510..337010 (+) 501 WP_004745401.1 type IV pilus modification protein PilV Machinery gene
  RKQ58_RS02530 (RKQ58_02530) pilW 337012..338049 (+) 1038 WP_216112386.1 PilW family protein Machinery gene
  RKQ58_RS02535 (RKQ58_02535) - 338046..338828 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  RKQ58_RS02540 (RKQ58_02540) - 338844..339239 (+) 396 WP_228750160.1 hypothetical protein -
  RKQ58_RS02545 (RKQ58_02545) - 339272..340480 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -
  RKQ58_RS02550 (RKQ58_02550) pilY2 340584..341012 (+) 429 WP_391485003.1 type IV pilin protein Machinery gene
  RKQ58_RS02555 (RKQ58_02555) pilE 341006..341470 (+) 465 WP_004745412.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16121.76 Da        Isoelectric Point: 8.5176

>NTDB_id=805844 RKQ58_RS02520 WP_114155191.1 336064..336513(+) (fimU) [Acinetobacter baumannii strain XH1034]
MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPMFGDLLINQNLNRSTEELVSSINQARMKAVVERRQVKVQLNSTYIADTD
NQINWMPSGKAQLKTGSDTSIIFLMSGLVKDATGDTTFEICNKTGGNKSKIISVSRMGAIQSTTVGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=805844 RKQ58_RS02520 WP_114155191.1 336064..336513(+) (fimU) [Acinetobacter baumannii strain XH1034]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACAATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCGCCAATGTTTGGGGATCTGTTAATTAATCAAAATTTGAATAGAAGTACAGAGGAGCTGGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTGTGGTAGAACGTAGACAAGTAAAAGTGCAATTAAATTCTACTTATATTGCAGATACTGAT
AATCAAATTAATTGGATGCCAAGCGGAAAAGCTCAATTAAAGACGGGATCTGATACCTCTATAATATTTCTGATGTCCGG
TTTAGTAAAAGACGCAACCGGAGATACTACATTTGAAATTTGTAATAAGACTGGGGGTAATAAATCAAAAATTATTAGTG
TTTCAAGAATGGGAGCAATTCAATCGACTACGGTGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

40.252

100

0.43