Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   P3R60_RS00980 Genome accession   NZ_CP120510
Coordinates   199920..201224 (+) Length   434 a.a.
NCBI ID   WP_218654370.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP21-2     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 194920..206224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3R60_RS00965 phoU 195701..196354 (+) 654 WP_115130300.1 phosphate signaling complex protein PhoU -
  P3R60_RS00970 - 196476..199010 (+) 2535 WP_316606433.1 M1 family metallopeptidase -
  P3R60_RS00975 ciaR 199256..199927 (+) 672 WP_104967889.1 response regulator transcription factor Regulator
  P3R60_RS00980 ciaH 199920..201224 (+) 1305 WP_218654370.1 cell wall metabolism sensor histidine kinase WalK Regulator
  P3R60_RS00985 rpsT 201697..201945 (-) 249 WP_104967887.1 30S ribosomal protein S20 -
  P3R60_RS00990 coaA 201998..202918 (-) 921 WP_316606434.1 type I pantothenate kinase -
  P3R60_RS00995 - 203045..203632 (+) 588 WP_316606435.1 class I SAM-dependent methyltransferase -
  P3R60_RS01000 - 204212..204601 (+) 390 WP_316606436.1 cytidine deaminase -
  P3R60_RS01005 - 204674..205723 (+) 1050 WP_316606437.1 BMP family protein -

Sequence


Protein


Download         Length: 434 a.a.        Molecular weight: 49883.47 Da        Isoelectric Point: 9.5055

>NTDB_id=805835 P3R60_RS00980 WP_218654370.1 199920..201224(+) (ciaH) [Streptococcus pluranimalium strain SP21-2]
MHKYIQKKIHSDNFKPFIHFMMVFTAIFFVMTIIILQIMRLGLYSSTDNSLKRARYSAASYIAMTMARNYSWSSDGDGFG
ITIDPSKFKHNDDLAVLDIIVFDRYGEVINTVDAYSEFSSIKLNKKQLNRIVKETHINTYGHAENYRSVTLEVTDLAYPQ
VKYISFLASTRQLDEAFDRYVNVIISIMIIFWLISVITSVYLAKWSRKPIIASYEKQKSFVENASHELRTPLAVLQNRLE
TLFRKPNDTILEHSESIAASLDEVRNMRMLTTNLLNLARRDDGIDPNIEDISPTFFDDVFKNYQLIAQENDKELMVLNHL
KRPIKSDKTLIKQLMTILVDNALKYTKKQGIISISVETKGRRLWLRVSDNGLGISDDDKSKIFDRFYRVDKARTRQSGGF
GLGLSLAKQIVDTLGGEITVKDNTPQGTIFDVFL

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=805835 P3R60_RS00980 WP_218654370.1 199920..201224(+) (ciaH) [Streptococcus pluranimalium strain SP21-2]
ATGCATAAATACATACAAAAAAAAATTCATTCTGATAATTTCAAGCCCTTTATCCATTTTATGATGGTATTCACTGCTAT
TTTCTTTGTGATGACGATTATTATTTTGCAGATTATGAGACTCGGTCTCTACTCTTCAACGGATAATAGTCTGAAAAGAG
CTAGGTACTCTGCGGCTAGTTATATTGCAATGACTATGGCTAGGAATTACTCTTGGAGCTCAGATGGTGATGGTTTCGGT
ATTACAATCGATCCTAGTAAGTTTAAACACAATGATGATCTGGCTGTTTTAGATATTATTGTATTTGATAGATATGGAGA
GGTTATTAATACGGTTGATGCCTATTCTGAATTTTCAAGTATTAAGCTTAATAAAAAACAGCTCAATAGAATTGTTAAAG
AGACTCACATCAACACTTATGGACATGCTGAAAATTATCGCAGTGTCACTCTTGAAGTTACCGATTTAGCCTATCCTCAA
GTAAAATATATTAGTTTTCTAGCGAGTACGAGACAATTGGATGAGGCCTTTGACCGCTATGTTAATGTTATTATAAGCAT
TATGATTATCTTTTGGTTGATATCAGTTATCACTAGTGTTTATCTAGCCAAGTGGAGTCGTAAACCAATCATTGCTAGTT
ATGAAAAACAAAAGAGCTTTGTTGAAAATGCCAGCCATGAATTAAGAACGCCCCTGGCTGTACTCCAAAATCGCTTAGAA
ACCTTGTTTAGAAAACCTAATGATACTATTCTTGAACATAGCGAGAGTATTGCAGCAAGTCTTGATGAAGTTAGAAATAT
GAGAATGTTAACGACAAATCTCTTAAACTTGGCTCGTCGTGATGATGGTATTGACCCGAACATAGAAGATATTTCACCAA
CATTTTTTGATGATGTCTTTAAAAATTACCAATTAATTGCTCAGGAGAATGACAAGGAGTTAATGGTATTGAATCATTTG
AAACGTCCTATTAAGTCAGATAAAACGCTCATAAAACAGTTGATGACTATTTTAGTTGATAACGCCTTGAAATATACAAA
GAAGCAAGGGATTATTAGTATTTCTGTTGAAACCAAGGGGCGCCGTTTGTGGTTGAGAGTATCAGATAATGGTTTAGGTA
TTTCAGATGACGATAAATCGAAAATCTTTGATCGATTTTACCGTGTTGATAAAGCAAGAACGAGACAATCTGGTGGATTT
GGTCTAGGTTTATCTCTTGCCAAGCAGATTGTAGACACTTTAGGTGGAGAGATAACAGTAAAAGATAATACACCTCAAGG
AACTATTTTTGATGTTTTCTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

59.028

99.539

0.588

  ciaH Streptococcus pneumoniae Rx1

48.174

100

0.486

  ciaH Streptococcus pneumoniae D39

48.174

100

0.486

  ciaH Streptococcus pneumoniae R6

48.174

100

0.486

  ciaH Streptococcus pneumoniae TIGR4

48.174

100

0.486