Detailed information NTG0805565

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RKQ62_RS04415
• Genome accession: NZ_CP134566
• Coordinates: 912405..913409 (-)
• Length: 334 a.a.
• NCBI ID: WP_001154002.1
• Uniprot ID: A3M7W1
• Organism: Acinetobacter baumannii strain XH1038
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 907405..918409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ62_RS04390 (RKQ62_04420)	tolA	907666..909069 (-)	1404	WP_001039163.1	cell envelope integrity protein TolA	-
RKQ62_RS04395 (RKQ62_04425)	tolR	909073..909525 (-)	453	WP_001007562.1	protein TolR	-
RKQ62_RS04400 (RKQ62_04430)	tolQ	909525..910223 (-)	699	WP_000224630.1	protein TolQ	-
RKQ62_RS04405 (RKQ62_04435)	ybgC	910247..910654 (-)	408	WP_001273591.1	tol-pal system-associated acyl-CoA thioesterase	-
RKQ62_RS04410 (RKQ62_04440)	-	910865..912199 (-)	1335	WP_017897375.1	M20 family metallopeptidase	-
RKQ62_RS04415 (RKQ62_04445)	ruvB	912405..913409 (-)	1005	WP_001154002.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RKQ62_RS04420 (RKQ62_04450)	ruvA	913418..914017 (-)	600	WP_000578663.1	Holliday junction branch migration protein RuvA	-
RKQ62_RS04425 (RKQ62_04455)	-	914109..915449 (-)	1341	WP_000437078.1	deoxyguanosinetriphosphate triphosphohydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36815.05 Da
• Isoelectric Point: 4.7936

>NTDB_id=805565 RKQ62_RS04415 WP_001154002.1 912405..913409(-) (ruvB) [Acinetobacter baumannii strain XH1038]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide

• Length: 1005 bp

>NTDB_id=805565 RKQ62_RS04415 WP_001154002.1 912405..913409(-) (ruvB) [Acinetobacter baumannii strain XH1038]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAAGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTAACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAAATTCACCGTCTTTCACCAGTAATTGAAGAAATTCTGTATCCAGCAATGGAAGATTACCAACTCGATA
TCATGATTGGTGAAGGCCCTGCTGCTCGTTCAATTAAACTCGATTTACCACCTTTTACGCTCGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCCCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACCTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTTAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGTTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-322)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: A3M7W1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	57.704	99.102	0.572
ruvB	Synechocystis sp. PCC 6803	57.325	94.012	0.539
ruvB	Streptococcus pneumoniae TIGR4	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae R6	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae D39	56.113	95.509	0.536
ruvB	Helicobacter pylori 26695	54.934	91.018	0.5