Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PVE91_RS14990 Genome accession   NZ_CP120400
Coordinates   3278573..3279631 (-) Length   352 a.a.
NCBI ID   WP_053518451.1    Uniprot ID   A0A4Q1CWE2
Organism   Stenotrophomonas maltophilia strain LH-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3273573..3284631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE91_RS14970 - 3274568..3276538 (-) 1971 WP_053518459.1 type IV pilus secretin PilQ family protein -
  PVE91_RS14975 - 3276560..3277093 (-) 534 WP_053518457.1 pilus assembly protein PilP -
  PVE91_RS14980 pilO 3277093..3277749 (-) 657 WP_053518455.1 type 4a pilus biogenesis protein PilO -
  PVE91_RS14985 - 3277746..3278573 (-) 828 WP_277381055.1 PilN domain-containing protein -
  PVE91_RS14990 pilM 3278573..3279631 (-) 1059 WP_053518451.1 pilus assembly protein PilM Machinery gene
  PVE91_RS14995 - 3279851..3282271 (+) 2421 WP_197600562.1 penicillin-binding protein 1A -
  PVE91_RS15000 - 3282426..3283073 (+) 648 WP_277381056.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37750.35 Da        Isoelectric Point: 4.4047

>NTDB_id=805506 PVE91_RS14990 WP_053518451.1 3278573..3279631(-) (pilM) [Stenotrophomonas maltophilia strain LH-B2]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALNRSGSKAKQAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGVIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAFALVASELPVSTDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=805506 PVE91_RS14990 WP_053518451.1 3278573..3279631(-) (pilM) [Stenotrophomonas maltophilia strain LH-B2]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTATTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTGTTGCAGCTTTC
CCGCAGTGGCAATCGTTTCCGTGTGGAACATTACGCCGTGGAACCACTGCCGCCGAATGCGGTCGTGGAGAAGAACATCG
TCGAGGTGGAGGCCGTGGGTGAGGCCATCCGCCGGGCGTTGAACCGTTCCGGCAGCAAGGCGAAGCAGGCCGCCGCCGCC
GTGGCCGGCTCGGCCGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCGCAGATCGA
GCTGGAAGCGGTCAACTACATTCCCTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGTGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGGTCCGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTTGCCAGTGAGCTGCCGGT
GTCCACCGACGGCGTGGTCGCGCTGGTCGACATCGGCGCCACGATGACCACCCTGAACGTCCTGCGCGGCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCCGGCAGCGAATTCAATCGTGTCGATCATATCGTGCTGGCCGGAG
GCTGCGCGGTTCTTGGGGGCCTGCCGGAAATGGTCGAGGAGCAGCTGGGTGTGCCGACCGTGGTCGCCAATCCGCTGGCG
CAGATGACGCTGGGACCGAAGGTGAACGCGCATGCGCTGGCCCAGGATGCTCCCGCGCTGATGATCGCGACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q1CWE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477