Detailed information NTG0805366

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RKQ65_RS15685
• Genome accession: NZ_CP134562
• Coordinates: 3156055..3157059 (+)
• Length: 334 a.a.
• NCBI ID: WP_001154002.1
• Uniprot ID: A3M7W1
• Organism: Acinetobacter baumannii strain XH1041
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3151055..3162059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ65_RS15675 (RKQ65_15680)	-	3154015..3155355 (+)	1341	WP_020753386.1	deoxyguanosinetriphosphate triphosphohydrolase	-
RKQ65_RS15680 (RKQ65_15685)	ruvA	3155447..3156046 (+)	600	WP_000578663.1	Holliday junction branch migration protein RuvA	-
RKQ65_RS15685 (RKQ65_15690)	ruvB	3156055..3157059 (+)	1005	WP_001154002.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RKQ65_RS15690 (RKQ65_15695)	-	3157264..3158598 (+)	1335	WP_020753387.1	M20 family metallopeptidase	-
RKQ65_RS15695 (RKQ65_15700)	ybgC	3158809..3159216 (+)	408	WP_001273591.1	tol-pal system-associated acyl-CoA thioesterase	-
RKQ65_RS15700 (RKQ65_15705)	tolQ	3159240..3159938 (+)	699	WP_000224628.1	protein TolQ	-
RKQ65_RS15705 (RKQ65_15710)	tolR	3159938..3160390 (+)	453	WP_001007562.1	protein TolR	-
RKQ65_RS15710 (RKQ65_15715)	tolA	3160394..3161740 (+)	1347	WP_020753388.1	cell envelope integrity protein TolA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36815.05 Da
• Isoelectric Point: 4.7936

>NTDB_id=805366 RKQ65_RS15685 WP_001154002.1 3156055..3157059(+) (ruvB) [Acinetobacter baumannii strain XH1041]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide

• Length: 1005 bp

>NTDB_id=805366 RKQ65_RS15685 WP_001154002.1 3156055..3157059(+) (ruvB) [Acinetobacter baumannii strain XH1041]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAAGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTGACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAAATTCACCGTCTTTCACCAGTGATTGAAGAAATTCTTTATCCGGCAATGGAAGATTACCAACTTGATA
TCATGATTGGTGAAGGTCCTGCTGCTCGTTCAATTAAACTCGATTTACCACCTTTTACGCTCGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCGCCTCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACCTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTCAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGTTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTGCAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-322)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: A3M7W1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	57.704	99.102	0.572
ruvB	Synechocystis sp. PCC 6803	57.325	94.012	0.539
ruvB	Streptococcus pneumoniae TIGR4	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae R6	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae D39	56.113	95.509	0.536
ruvB	Helicobacter pylori 26695	54.934	91.018	0.5