Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   P3T65_RS10820 Genome accession   NZ_CP120376
Coordinates   2320085..2321422 (-) Length   445 a.a.
NCBI ID   WP_024763095.1    Uniprot ID   A0A6G6IRG3
Organism   Pseudomonas nitroreducens strain L4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2315085..2326422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T65_RS10790 (P3T65_10790) - 2315717..2316292 (-) 576 WP_024763089.1 pilus assembly PilX family protein -
  P3T65_RS10795 (P3T65_10795) - 2316289..2317035 (-) 747 WP_052239113.1 PilW family protein -
  P3T65_RS10800 (P3T65_10800) pilV 2317047..2317616 (-) 570 WP_024763091.1 type IV pilus modification protein PilV -
  P3T65_RS10805 (P3T65_10805) - 2317625..2318101 (-) 477 WP_024763092.1 GspH/FimT family pseudopilin -
  P3T65_RS10810 (P3T65_10810) - 2318253..2318765 (-) 513 WP_024763093.1 GspH/FimT family pseudopilin -
  P3T65_RS10815 (P3T65_10815) thiO 2318960..2320069 (+) 1110 WP_277369273.1 glycine oxidase ThiO -
  P3T65_RS10820 (P3T65_10820) pilR 2320085..2321422 (-) 1338 WP_024763095.1 sigma-54-dependent transcriptional regulator Regulator
  P3T65_RS10825 (P3T65_10825) pilS 2321438..2323027 (-) 1590 WP_024763096.1 sensor histidine kinase Regulator
  P3T65_RS10830 (P3T65_10830) - 2323017..2323259 (-) 243 WP_277369412.1 PP0621 family protein -
  P3T65_RS10835 (P3T65_10835) - 2323415..2324440 (-) 1026 WP_024763098.1 outer membrane protein assembly factor BamD -
  P3T65_RS10840 (P3T65_10840) rluD 2324588..2325547 (+) 960 WP_024763099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P3T65_RS10845 (P3T65_10845) pgeF 2325544..2326269 (+) 726 WP_037011615.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49631.91 Da        Isoelectric Point: 5.4513

>NTDB_id=805265 P3T65_RS10820 WP_024763095.1 2320085..2321422(-) (pilR) [Pseudomonas nitroreducens strain L4]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQMPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLARLRELVNSALRLRSPEAEEAPVDSRLLGDSPPMRTLRNQVAKLARSQAPVY
ISGESGSGKELVARLIHEQGPREVQTFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKLGLFQAANGGTLFLDEVADLP
LPMQVKLLRVIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTDRV
LKRLAGDSGLTAASVSADALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPHDLRLAETGTADGGGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=805265 P3T65_RS10820 WP_024763095.1 2320085..2321422(-) (pilR) [Pseudomonas nitroreducens strain L4]
ATGAGCCGTCAAAAAGCCCTGATCGTCGACGACGAACCCGACATTCGCGAGCTGCTGGAAATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGACTTCCTGGCCCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGACCTGGTGCAATACATCCAGCAACGCCATCCTCAGATGCCGGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGATACCGCGGTGCAGGCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAGCCTGTGGA
CCTCGCCCGTCTGCGCGAGCTGGTGAACTCCGCCCTGCGCCTGCGCTCGCCGGAAGCCGAGGAAGCGCCGGTGGACAGCC
GCCTGCTCGGCGACTCCCCACCCATGCGCACCCTGCGCAACCAGGTGGCCAAGCTGGCCCGCAGCCAGGCGCCGGTTTAT
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTGGCCCGGCTGATCCACGAGCAGGGCCCGCGGGAGGTACAGACCTT
CGTGCCGGTCAACTGCGGCGCCATCCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCTGGGCCTGTTCCAGGCAGCGAACGGCGGCACCCTGTTCCTCGACGAGGTGGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGTCATCCAGGAAAAGGCCGTGCGCGCCGTGGGGGGCCAGCAGGAGGTCGCGGT
GGACGTGCGCATCCTCTGTGCGACGCACAAGGACCTGGCCGCCGAAGTGGCCGCCGGGCGCTTCCGTCAGGACCTCTACT
ATCGCCTGAACGTCATCGAGTTGCGGGTTCCGCCCCTGCGCGAGCGTCGTGAAGACATCCCGCTGCTGACCGATCGCGTA
CTCAAGCGCCTGGCCGGCGACAGCGGGCTGACAGCCGCCTCGGTCAGCGCCGACGCCCTGGAGAAGCTCAAGAGCTACCG
CTTCCCGGGCAACGTGCGGGAGCTGGAGAACATGCTCGAGCGCGCCTACACGCTTTGCGAAGACGACGTTATCCAGCCCC
ACGACCTGCGTCTGGCCGAGACAGGTACCGCGGACGGCGGTGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAGGAC
TACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCCCTGGAAGAGACGCGCTGGAACCGCACCGCGGCGGCGCAGCG
CCTGGGCCTGACCTTCCGCTCCATGCGCTACCGCCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6IRG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.989

100

0.89
  pilR Acinetobacter baumannii strain A118

48.253

100

0.497